KEGG   Oryza sativa japonica (Japanese rice): 4328083
Entry
4328083           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4328083
  09124 Replication and repair
   03420 Nucleotide excision repair
    4328083
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4328083
   03400 DNA repair and recombination proteins [BR:osa03400]
    4328083
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4328083
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4328083
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 4328083
NCBI-ProteinID: XP_015627142
UniProt: A3A2G2 Q6ZGM1
LinkDB
Position
2:complement(join(901749..902128,902206..902254))
AA seq 142 aa
MSGEEEENAAELKIGEEFLKAKCLMNCEVAIILEHKYEQIQHMSDGDPSSQVSQVFEKSL
QYVKRFSRYKNPDAVRQVRETLSRYGLAEFELCTLGNLCPDTSDEASALVPSLRSGGRFV
GDPGSEKIDKMLNDLSLIKKFE
NT seq 429 nt   +upstreamnt  +downstreamnt
atgtccggcgaggaggaggagaacgcggcggagctcaagatcggggaagagttcttgaag
gccaagtgcctgatgaactgcgaggtggcgataatcctggagcacaagtacgagcagatc
cagcacatgtcggacggggacccgtcgtcgcaggtgtcgcaggtgttcgagaaatcgctg
cagtacgtgaagcggttcagccggtacaagaacccggacgcggtgaggcaggtgagggag
acgctgagccgctacggcctcgccgagttcgagctctgcaccctcggcaacctctgcccc
gacaccagcgacgaggcctccgccctcgtcccctccctccgctccggcggcaggttcgtc
ggcgaccccggcagcgagaagatcgacaagatgctcaacgacctctcccttatcaagaag
ttcgagtag

KEGG   Oryza sativa japonica (Japanese rice): 4330570
Entry
4330570           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase II subunit 4
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
osa03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4330570
  09124 Replication and repair
   03420 Nucleotide excision repair
    4330570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4330570
   03400 DNA repair and recombination proteins [BR:osa03400]
    4330570
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     4330570
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      4330570
SSDB
Motif
Pfam: RNA_pol_Rpb4
Other DBs
NCBI-GeneID: 4330570
NCBI-ProteinID: NP_001403779
LinkDB
Position
2:complement(join(30545782..30545856,30545942..30546010,30546087..30546120,30546234..30546311,30546429..30546540,30546837..30546935,30547108..30547200,30548255..30548323,30550106..30550172))
AA seq 231 aa
MAERGSRGFSAASKGKAIASKKGSLRQNSSANIPHVNIDSDSDSEGFVEELPRVNSKTNG
KAASESLKTGGKASSKGQTGKGGNAGKGGKGSASARVSAKSDAELKLELDMPPNSCILMN
CEVAELLQEIHEHMAILSEDPKIKIPESFDKAFQYVKEGNQFSTAQSVKQVLDPLRKYGV
SDGEMCLIANVGPETIEEVYALVPSLKATRSLNESPIMEALTALADIKAAK
NT seq 696 nt   +upstreamnt  +downstreamnt
atggcggagaggggatcgaggggcttctccgcggcctccaaggggaaggccatcgcgtcc
aagaaaggttcacttaggcaaaacagctctgccaatatcccgcatgttaatattgattcc
gattctgattctgaaggtttcgtggaagaactgcctcgtgtcaactctaaaacaaatggg
aaggctgcatctgagagcctaaaaactggcgggaaggcctcatctaaaggacaaactggc
aaaggagggaatgctggcaaaggtggaaagggttctgcatcagctcgagtttctgcaaag
tctgatgcagagctaaagcttgagctcgatatgcctccaaactcttgcattttaatgaat
tgtgaagtagcagaactattgcaagaaattcatgagcatatggctatcttatcagaggat
ccaaagatcaaaattccagagtcatttgataaggctttccaatatgtgaaagaaggaaat
cagttttccaccgcacagtctgtgaaacaagtcctagaccctcttagaaaatatggtgtt
agtgatggagagatgtgcttgatagcgaacgttggacctgagaccattgaagaggtttat
gcgctagtaccatccctgaaggccactagatcactcaacgaaagtcccatcatggaggct
ctcactgcgcttgctgacataaaagctgctaagtga

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