Oryza sativa japonica (Japanese rice): 4328103
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Entry
4328103 CDS
T01015
Name
(RefSeq) syntaxin-52
KO
K08503
syntaxin of plants SYP5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4328103
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4328103
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[C] (Qc)
STX8
4328103
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin-6_N
DUF2721
Motif
Other DBs
NCBI-GeneID:
4328103
NCBI-ProteinID:
XP_015626626
UniProt:
A3A2I2
Q6YUT2
LinkDB
All DBs
Position
2:complement(join(1029267..1029398,1029507..1029551,1029630..1029730,1029982..1030085,1030232..1030333,1031070..1031284))
Genome browser
AA seq
232 aa
AA seq
DB search
MASSSDPWVREYSEASRLADDVTSMIADRGSLPQSGPEIMRHTSAIRRKITILGTRLDSL
EALLSRIPPKSITDKELHKRQDMLSNLKSRAKQMATSFNMSNFANREDLLGQSKKAADDM
SRVAGLDNQGIVSLQRQVMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLDDY
VDVTNSRLQRVQKRLAILNKRVKGGCSCMALLISVVAIVFLAVIAWLLIKHL
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcgtcttcggatccatgggtgagggagtacagcgaggcgtccaggctcgcggat
gacgtcacctccatgatcgccgataggggttcgctcccgcagtcggggccggagatcatg
cgccacacctcggccattcggaggaagataaccatcctcgggactaggctcgatagcctc
gaggccttgctgtccaggattcctcccaagtccatcacggacaaggagttgcataagcga
caagacatgctttcaaatctgaaatctagagcaaagcagatggctacaagtttcaacatg
tcaaactttgcaaacagggaggatttgcttggtcagagtaagaaagcagctgatgatatg
agtagagtagctggtttggataaccaaggaatcgtttcacttcagaggcaagttatgaaa
gaacaagatgagggtcttgagaagctggaagagacagtactgagcacaaaacatattgct
ctagcagtcaatgaagaacttaccctgcatacaagattgattgatgatttggatgattat
gttgatgttacaaactcacgtcttcagcgcgtgcaaaagaggcttgctattctgaataag
cgcgtcaaaggtggctgctcgtgcatggccctgctgatatctgtcgttgctatagtgttt
cttgcggtcattgcttggcttctcatcaagcacctgtaa
Oryza sativa japonica (Japanese rice): 4345157
Help
Entry
4345157 CDS
T01015
Name
(RefSeq) syntaxin-52
KO
K08503
syntaxin of plants SYP5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04130
SNARE interactions in vesicular transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04130 SNARE interactions in vesicular transport
4345157
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4345157
Membrane trafficking [BR:
osa04131
]
SNARE
SNAP-25[C] (Qc)
STX8
4345157
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNARE
Syntaxin-6_N
DUF5345
DUF2730
YjcZ
FAM76
Motif
Other DBs
NCBI-GeneID:
4345157
NCBI-ProteinID:
XP_015650978
UniProt:
Q0J6R5
Q6Z1L9
LinkDB
All DBs
Position
8:join(10818285..10818499,10819376..10819477,10819646..10819749,10819999..10820099,10820179..10820223,10820340..10820471)
Genome browser
AA seq
232 aa
AA seq
DB search
MASSSDPWMKEYNEASRLADDINSMIADRGSLPQSGPEIIRHTSAIRRKITILCTRLDSL
EALLSKIPPKSLSDKELHKRQDTLSNLKSKTKQMATSFNMSNFANREDLLGQNKKAADDM
SRVAGLDNQGIVGLQRQIMKEQDEGLEKLEETVLSTKHIALAVNEELTLHTRLIDDLEDH
VDVTNSRLQRVQKRLAILNKRTKGGCSCMCLLLSVVAIVILAVIVWLLIKYM
NT seq
699 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcttcggacccatggatgaaagagtacaatgaggcatctaggcttgctgat
gatatcaattccatgattgccgatagagggtctcttccacaatcaggcccggaaattata
cgtcacacatcagccattcgaagaaaaataactattctttgtactagactggatagcttg
gaagcattgttgtccaagattcctccgaagtcactcagtgacaaggagttacacaagcgc
caagacacgctttccaatttgaaatctaaaacaaaacagatggcaacaagttttaacatg
tcaaactttgccaacagggaggacttgcttggtcagaacaagaaggcagctgatgatatg
agcagagttgctggtttggataaccaagggattgttggccttcagaggcaaattatgaaa
gaacaagatgaaggtcttgagaagctggaagagacagtcctgagtacaaaacatatcgct
ttagcagtcaatgaagaacttaccctgcatacgagattgattgatgacttggaagatcat
gttgatgttacaaactcgcgtcttcagcgtgtgcaaaagaggcttgcaattctgaacaag
cgcaccaaaggtggctgctcatgcatgtgcctgctgctatctgtcgtcgcaatagtgatc
cttgctgttatcgtgtggcttcttatcaagtatatgtaa
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integrated database retrieval system
