KEGG T01015: 4328152

Oryza sativa japonica (Japanese rice): 4328152

Entry

4328152           CDS       T01015

Name

(RefSeq) general transcription and DNA repair factor IIH subunit TFB4

K03143

transcription initiation factor TFIIH subunit 3

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03022

Basal transcription factors

osa03420

Nucleotide excision repair

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    4328152
  09124 Replication and repair
   03420 Nucleotide excision repair
    4328152
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4328152
   03400 DNA repair and recombination proteins [BR:osa03400]
    4328152
Transcription machinery [BR:osa03021]
Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     4328152
DNA repair and recombination proteins [BR:osa03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     4328152

SSDB

Motif

Pfam:

Tfb4

Other DBs

NCBI-GeneID:

4328152

NCBI-ProteinID:

XP_015626158

UniProt:

Q6Z2N2 A0A0P0VE55

LinkDB

Position

2:complement(join(1354896..1354953,1355068..1355163,1355475..1355551,1356413..1356481,1356604..1356657,1356893..1356938,1357015..1357052,1357323..1357369,1357452..1357722,1358006..1358094,1358191..1358215))

AA seq 289 aa
MASSKLYSDDVSLAVVVVDTNPLFWATAALPFADFFAHLIHYVNSLLLLNHLNHVVVIAA
GLSSCTYIFDSSDASASGAADVAATFAKASRKMDEFIAEDARATSSNGSVADGNAASLLS
GALSLALCYIQRVFRSGTRHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRSMVPIDSCIV
GTQDSAFLQQASYITGGVYLKPQELNGLFQYLAAVFATDLHSRTFLRLPKTLGVDFRASC
FCHKKTIDMGYVCSVCLSIFCKYHKKCSTCGSEFNRVMPDLNSVPDQRQ

NT seq 870 nt +upstreamnt +downstreamnt
atggcctcctccaagctctactccgatgacgtcagcctcgccgtcgtcgtcgtcgacacc
aaccccttgttctgggccaccgccgccctccccttcgccgacttcttcgcccatctgatc
cactacgtgaactcgctcttgcttctgaaccacctcaaccatgtggtcgtcatcgccgcg
gggcttagctcttgcacctacatcttcgactcgagcgatgctagtgcctctggtgctgca
gacgtcgcggccaccttcgcaaaggcgagccgcaagatggatgagttcattgcagaagac
gcccgtgccactagcagcaatggttccgttgctgatggcaatgcagcctctcttctctca
ggcgcactgtcccttgctctgtgctatatacagagggtttttcggtctggtactcgacat
ccacaacctcggattttatgcctgcagggttctccagatggacctgaacaatatgtagcg
gtcatgaactcaatattttctgctcaacgttccatggtcccaatcgattcatgcatagta
ggaacccaagactctgctttcttgcaacaggcttcatatataacaggtggagtttatttg
aaaccccaagaactaaatggtctatttcaataccttgctgctgtatttgcaactgattta
cactcaagaacctttctgcgcctccccaagactctgggagtggatttccgtgcttcatgt
ttctgccataagaagactattgacatgggatatgtttgttcagtttgtttatcgatattc
tgcaagtatcataagaagtgttcgacctgtgggtcagaattcaaccgtgtcatgcccgac
ttaaattctgtacctgatcaaaggcagtag

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