KEGG   Oryza sativa japonica (Japanese rice): 4328330
Entry
4328330           CDS       T01015                                 
Name
(RefSeq) DNA-directed RNA polymerase V subunit 1
  KO
K16251  DNA-directed RNA polymerase V subunit 1 [EC:2.7.7.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    4328330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:osa03021]
    4328330
Enzymes [BR:osa01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     4328330
Transcription machinery [BR:osa03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol IV and V specific subunits
     4328330
SSDB
Motif
Pfam: RNA_pol_Rpb1_2 DUF3223 RNA_pol_Rpb1_5 RNA_pol_Rpb1_3 RNA_pol_Rpb1_1
Other DBs
NCBI-GeneID: 4328330
NCBI-ProteinID: XP_015625443
LinkDB
Position
2:complement(join(2913479..2913859,2913975..2914083,2914262..2915928,2916103..2916243,2916323..2916496,2917030..2917304,2918045..2918208,2918862..2918989,2919081..2919156,2920719..2920894,2920983..2922710,2923537..2923692,2923781..2923939,2924034..2924204,2924870..2924926,2925018..2925133,2925243..2925369,2926315..2926398))
AA seq 1962 aa
MEEDQSAIPVAEGAIKSIKLSLSTEDEIRTYSINDCPVTHPSQLGNPFLGLPLETGKCES
CGASENGKCEGHFGYIELPVPIYHPCHVTELRQILNVVCLKCLRVKKGKVKQTEGKDNTS
ALSCYYCRDLPALSLKEIKTADGAFRLELKMPPRKFMTEGSWNFLDKYGFHHGGTSHCRT
LLPEEALNILKKIPEETKRKLAARGYIAQSGYVMKYLPVPPNCLYIPEFTDGQSIMSYDI
SISLLKKVLQKIEQIKKSRAGSPNFESHEVESCDLQLSIAQYIHLRGTTRGPQDNTKRFA
ISTDPSALSTKQWLEKMRTLFISKGSGFSSRSVLTGDPYIGVDVIGLPSEVAKRITFEEQ
VTDINLNRLQEIVDKGLCLTYRDGQATYAITVGSKGHTTLKVGQTISRRIVDGDVVFLNR
PPSTHKHSLQAFRVYVHEDHTVKINPLICAPFAADFDGDCVHIYYPQSLAAKAEALELFS
VEKQLTSSHSGKVNLQLVSDSLLALKHMSSRTMLSKEAANQLAMLVTCSLPDPAVIKSKP
YWTISQIVQGALPKALTSQGDKHVVRDSTIIKLDLDKESVQTSFSDLVYSTLSVKGPGEA
LQFLNVLQPLLMELILLDGFSVSLQDFNVPKVLLEEAQKNIEKQSLILEQSRFAENQVVE
MRVDNNLKDIKQQISDFVVKRSHLGLLIDPKSDSSVSKVVQQLGFVGLQLYREGKFYSRR
LVEDCYYTFVNKHPAVREEHSPEAYGLVRSSYFHGLNPYEELVHAISTREAIVRSSRGLT
EPGTLFKNLMALLRDVVICYDGTVRNVCSKSIIQLNYTEDDALDFPSAIGPGEPVGVLAA
TAISNPAYKAVLDASQSNNTSWERMKEILQTTSRYKNDMKDRKVILFLNDCSCAKKFCKE
KAAIAVQGCLRRITLEDCATDICIEYQKQIGLDGTSEAAPALVGHIHLDRAHLERINIST
EDILQKCQEVSGKYGKKKGHLSNLFKNITFSTCDCLFTQKLVDGKLPKLPCLQFFVSDNM
IVSESVERAVSVLADSLCGVLLNTIIKGDPRIQEAKIVWVGSDATSWVKNTQKASKGEPA
VEIIVEEEEALHIGDAWRTTMDACIPVLNLIDIRRSIPYGIQQVRELLGISCAFDQVVQR
LSTTVRMVAKDVLKDHLVLVANSMTFTGNLNGFNNAGYKATFRSLKVQVPFTESTLITPM
KCFEKAAEKCHSDSLGCVVSSCSWGKHAASGTGSSFQILWNESQLKSNKEYGDGLYDYLA
LVRTDEEKARYTFFDDVDYLAEENEADVCLSPELDGTIGQPIFDDNLEEQDVQNNSSWDN
GTTTNASWEQNGSAGNDSDKWGGWNDAAAGADTGVTKPANQGNSCWDVPATVEKSSSDWG
GWGTEKAKEKEKISEEPAQHDAWSVQGPKRATDGGASWKKQSSTQNDGNSWKENKGRGSN
GGSWEKDNAQKGSWGRGNDEAENNNDVQNKSWETVAADAHASTEKSWGNVTASPSDNAWS
AAPVSQGNGSSDTKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNASPVSQGNE
RSDAKQSDSWDGWKSAGVDKAINKDKESLGNVPASPSFSAWNAAPVSQGNERLDAKQSDS
WDGWKSAGVDDSVKDKESWGNVPASPSDSAWNAAPVSQGNESSDAKQSDSWDGWKSAGVD
ASTNKDKESWGNVPASPSDSAWNAAPVSQGDDVWNSAEANESRNKDWKSDGWGARGGNWR
GQRNNPGRPPRKPDGRGLPRRPDERGPPRRHFDLTAEEEKILGEIEPTVLSIRKIFRESI
DSIKLSPEDEKFIKENVLEHHPEKQSKVSGEIDHIMVDKHQVFQDSRCLFVVSSDGTRSD
FSYLKCMENFVRKTYPEHGDSFCKKYFKRRRDQPPAADGGTAPGTPAGATQSTAVDTQEG
TSQQTQPDIATAPAATQQETLQDTPAPPADDGLLGKGPSPSD
NT seq 5889 nt   +upstreamnt  +downstreamnt
atggaggaggaccagtcagcaattccggttgctgaaggtgccatcaagagcatcaagctt
agcctatccactgaggatgagattcgtacttattctataaatgactgtcctgtcactcat
cctagtcagctcggaaatcccttccttgggttacctttggagacaggaaaatgcgagtcc
tgtggtgcctcagaaaatggaaaatgcgaagggcatttcgggtacattgagctgcctgtg
cctatatatcacccttgccatgtaacggaactgaggcagatattaaatgtggtatgtttg
aaatgcctccgcgtcaagaaaggaaaggtcaaacagacagagggaaaggataacacatca
gcattgtcatgctactattgtcgggatcttccggcattatctttgaaagaaatcaaaaca
gcagatggtgcatttcgtttagagttgaaaatgcctcctaggaaattcatgacagaaggc
tcatggaacttccttgacaagtatggatttcaccatggtggaacctcccactgcaggacc
ttgctcccggaagaggctctcaatatattgaagaaaattcctgaagaaacgaagaggaaa
ctagctgctcgtggttacattgctcaatctggatatgtgatgaaatacctccccgtgcca
ccaaattgtttatacattccagaatttacagatgggcagagcatcatgtcctatgacata
tcaatatctctgctgaagaaggtgcttcagaaaatagagcagataaaaaagtcaagagct
ggatccccaaactttgaatcacatgaagttgaatcatgtgatctacagctctctattgcc
cagtacatacatctaaggggcactacaaggggtcctcaagacaacaccaagagatttgca
atcagtactgatccttctgcgttatcaacaaaacaatggctggagaagatgagaacatta
tttatcagcaaagggtcagggttttcatcacgcagtgtacttactggagatccatatatt
ggagtagatgtgattggactgccttctgaagtggcaaaaagaatcactttcgaagagcag
gtaacagacatcaaccttaacaggttgcaagagattgtggataagggattgtgtttgacc
tacagagatggccaggcaacctatgccatcaccgttggatccaaaggtcacactaccctg
aaagtcggacagactatcagtaggagaattgttgatggggatgttgttttccttaaccgt
ccacccagtacccacaagcattccctccaggcatttcgcgtgtatgtccatgaagaccat
acggtcaagatcaatccgctcatatgcgcaccttttgcagcggactttgacggtgattgt
gtgcacatctattatccacagtcccttgctgcaaaagctgaagcactggagcttttcagt
gtggagaagcagcttaccagttcgcacagtggcaaggtcaatctccagctagttagtgac
agtttgcttgctctgaagcatatgtcttccagaacaatgttgagcaaagaagcagctaac
cagctggcaatgcttgttacatgttctcttccagatcctgctgtgatcaagtcaaagccg
tactggacaatctcgcaaatagtgcaaggtgctctgccaaaagccttaacttctcaaggg
gacaaacacgtagtcagggacagcactattataaaactggatcttgacaaagaatctgtt
cagacatcattctcagatttagtgtattccactctttctgttaagggtccaggagaagca
ctacaatttttgaatgtgctgcagccattattgatggaattgattcttttggatggcttt
agtgtaagcctccaggacttcaatgttcccaaggttctattggaagaagcacagaagaac
attgaaaaacagtctcttatccttgaacaatcaagatttgcagaaaatcaggttgttgaa
atgcgtgttgataataatttgaaggacatcaaacagcaaatttcagattttgttgtgaaa
cgctctcatcttggacttctgattgatccaaagagtgactcttcagtgtctaaagttgtc
cagcagcttggttttgtgggtttacaactttaccgtgaggggaagttctactcacgtcgt
ctggtggaggattgctactacacttttgtgaacaagcacccagctgtcagagaagaacat
tctccagaggcatatggtcttgtacggagttcatattttcatggccttaatccgtatgag
gagctggtgcatgctatttcgacaagagaagctattgttcgctcctctagggggttgacg
gagcctggaacactatttaagaatctaatggcgttactgcgggatgtcgtcatatgctat
gatgggacagtaagaaatgtctgcagcaagtctatcatacaacttaactacacggaggat
gatgccttggacttccctagtgcaataggtcctggcgaaccagttggtgtcttggctgcg
actgctatctccaaccctgcatacaaggctgtcttggatgcatctcagagtaacaatact
tcatgggagcggatgaaggaaatacttcagacaacaagtcgctacaaaaacgatatgaaa
gaccgaaaagttatcctatttctgaatgattgctcttgtgccaagaagttttgcaaggaa
aaggctgctattgcagttcagggctgcctaaggagaattacgttagaagattgtgctact
gacatctgcattgagtaccagaagcaaataggtttagatggaacttcagaagcagcccca
gcacttgttggccatattcatcttgacagggcacatttagaaaggatcaacattagcact
gaagatattcttcagaaatgccaagaagtttctgggaaatatgggaagaagaaaggacat
ctcagtaacctgtttaaaaatattacattctctacttgcgattgtttattcacacagaag
ctggttgatggaaagctacctaagcttccgtgtttgcaattctttgtttctgataacatg
atagtatctgaatcagtggagagagcagtcagtgtgttagctgattctctatgtggagtg
cttttgaatacaatcataaaaggtgatcctcgaattcaagaggctaaaattgtttgggtt
ggatcggatgcaacatcttgggttaaaaacacacagaaggcatcaaagggtgagccagca
gtagaaattattgttgaagaagaggaagctttacatattggtgatgcctggagaacaaca
atggatgcctgcataccggttctgaacctcattgatatacggagatcaatcccttatggt
attcaacaagtgcgagaacttcttggcatctcatgtgcttttgatcaagttgtgcagcgg
ctttcaacaactgtaaggatggtcgctaaagatgttctcaaagatcatctggtacttgtg
gcaaatagcatgacatttactggaaacctgaatggatttaacaatgctggttacaaggcc
accttccgttccttaaaagttcaagtacctttcacagagtccacattgattacccctatg
aaatgctttgagaaggctgcagagaaatgtcattcggattcattgggatgtgttgtttca
tcatgttcttggggcaagcatgctgcaagtggtactggatcatcttttcagattctgtgg
aatgaaagtcagctgaaaagcaataaggagtatggtgatggcctgtatgattacttggca
ttggtgcgtactgacgaggaaaaggcaagatacacattctttgatgatgtggactacctt
gcagaagagaacgaggcagatgtgtgcttatctcctgaattggatgggaccattggtcaa
ccgatcttcgatgataatttggaagagcaagatgttcagaataacagctcgtgggataat
ggcacaacaacaaatgcaagctgggaacagaatggtagtgctggaaatgattctgataaa
tggggaggttggaatgatgcagctgcaggagctgacacgggagtcacaaaaccagcaaac
caagggaattcgtgttgggatgtgcctgcgacagtggaaaagagttcctctgattgggga
ggctggggcactgaaaaggcgaaggagaaggagaaaatatctgaagagccagctcaacat
gatgcttggtctgtccagggccctaaaagggcaacagatggaggagccagctggaagaag
cagtctagcactcagaatgatgggaactcctggaaagagaacaagggaagaggatcaaat
ggaggttcctgggagaaagataatgcgcaaaagggatcatggggcaggggcaatgatgaa
gctgaaaataataatgatgtgcaaaacaaatcttgggagactgtggctgcagatgctcat
gcttctacagagaagtcctggggcaatgttactgcatctccatcggataatgcatggagt
gctgctccggtttcccaagggaatggaagttcagatacaaagcaatctgattcttgggat
ggctggaagtctgctggagttgacaaagcaattaacaaagacaaggaatccttgggcaat
gtgcctgcatctccatcatttagtgcgtggaatgcttctccagtttcccaagggaatgaa
cgttcagatgcaaagcaatctgattcttgggatggctggaagtctgctggagttgacaaa
gcaattaacaaagacaaggaatccttgggcaatgtgcctgcatctccatcatttagtgcg
tggaatgctgctccagtttcccaagggaatgaacgtttagatgcaaagcaatctgattct
tgggatggctggaagtctgctggagttgatgattcagttaaagacaaggaatcctggggt
aatgtgcctgcatccccatcagatagtgcgtggaatgctgctccagtttcccaagggaat
gaaagttcagatgcaaagcaatctgattcttgggatggttggaagtctgctggagttgat
gcttcaactaacaaagacaaggaatcctggggcaatgtgcctgcatctccatcagatagt
gcatggaatgctgctccagtttcccaaggggatgatgtctggaattctgctgaagccaat
gagtcacgtaataaggactggaaatcagatggatggggtgccagaggtggcaattggagg
ggccaaagaaacaatcctggtaggcccccaaggaaacctgatggcaggggtctgcctagg
agacctgatgagagggggccaccaaggcgacactttgacctaacagctgaggaggaaaag
attctaggagaaattgaacccactgtgctgagcatcagaaagattttccgtgaatcaatt
gatagcataaaactttctccggaagacgaaaaattcatcaaagagaatgttcttgaacac
caccctgagaaacaatcaaaggtgtctggtgaaatcgatcacataatggttgacaagcac
caagtgttccaggatagtcggtgcttgtttgtggtgtcttcagatggaactcggtcagat
ttctcctatttaaaatgcatggagaattttgtgaggaagacctaccctgagcatggggac
tcattctgcaagaagtatttcaagaggcgccgtgaccaaccaccagcagctgatggaggc
acagcaccaggcactccagctggggctacacagtctactgcagttgatacccaggagggc
acttcacagcagacccaaccagatatcgcaaccgctccagctgcaactcaacaagagact
cttcaagacactccagctcctccagcagacgatggattgctcgggaagggacctagcccg
tctgactga

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