KEGG   Oryza sativa japonica (Japanese rice): 4328375
Entry
4328375           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
  KO
K12599  antiviral helicase SKI2 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4328375
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4328375
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4328375
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    eIF4F and regulatory proteins
     4328375
  mRNA degradation factors
   3'-5' decay
    Ski complex
     4328375
SSDB
Motif
Pfam: DSHCT MTR4_beta-barrel DEAD MTR4-like_stalk Helicase_C Ski2_N DEXQc_Suv3 ResIII AAA_22 Ntox28
Other DBs
NCBI-GeneID: 4328375
NCBI-ProteinID: XP_015626830
LinkDB
Position
2:complement(join(3246308..3246520,3246601..3246727,3246877..3247115,3247396..3247610,3248028..3248490,3249021..3249174,3250183..3250292,3250999..3251256,3251951..3252004,3252661..3252771,3252849..3253004,3253257..3253623,3254556..3254623,3255111..3255221,3255333..3255533,3255843..3255944,3256439..3256546,3256668..3256870,3257022..3257139,3257233..3257313,3257417..3257959,3258061..3258189))
AA seq 1376 aa
MGDLTTSSPASEVPFRVSFSGHGGHLRLDPTPNPPSPIPEFVLPPAYPLESPSSVKEYLE
ANYLNPELHLPTAADGARVWDLDWFELARPPLEPSAPRTMLVPAWEPPFRRRRPPLSSSS
SRQESQVWDPESVQMDMSDVFDSGTGGITPRMPGPAKDFVRGSVNSRPFRPGGLHDDAAA
AAALEKAFPEGARNGDWVRELMSGGPAQVNPPGFRKGLDLGNLKEYKSHWKCYQDGERVD
EQSTSSSNDTMDKYSVQFDDLFKIAWEEDSDDKVPREDHVQQLVGDEETNDVDKQNISKL
QNASETIENLDIEKQKGGAQGDVSEPQSDLDQMLLSSVKDTSRDSSGSGDGSMAKEGKVW
ALVGGDEDIVTNFYKLVPDMAIEYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAE
YAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILR
SMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFA
DWIGRTKQKKIHVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSS
KLGMKPGSKPGTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSES
SFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRL
KGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA
PARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKN
LIVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLR
QPTKTIECIKGEPAIEEYYEMVLEAEAHRESITEAIMQLPASQQSLTPGRLVVVKSQSDD
DHLLGVIVKTPSAALKQYVVLVLTGDCTSSALAPDSSNQNEKEAGDFKQGYFVIPKGKRS
MEDEYFSSVSTRKGSGVINIKLPYKGDASGMGFEVRAIENKEIMNICASKIKIDQVRLLE
DPSKTVYSKTVQMLIKEQPDGNKYPAALDAIKDLKMKDMLLVENYYAYQRLLQKMSENKC
HGCIKLKEHIALMKEQKVYKDQLNDLKYEMSDEALQQMPEFQGRIDVLKEIHYIDSDLVV
QLKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSALVFQQRNTSEPSLTPKLAD
ARKRIYDTAIRLGKLQREFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS
EGLIVRTIVRLDETCREFRNAASIMGNSALHKKMETASNAIKRDIVFAASLYVTGI
NT seq 4131 nt   +upstreamnt  +downstreamnt
atgggcgacctcaccacctcgtcgccggcgagcgaggtgccgttccgcgtcagcttctcc
ggccatggcggccacctccgcctcgaccccacgcccaatccgcccagccctatacccgag
ttcgtcctgccgccggcgtacccgctggagagcccgagcagcgtgaaggagtacctcgag
gccaactacctcaacccggagctccacctccccaccgcggccgatggcgcgagggtgtgg
gatttggattggttcgagttggctaggccgccgctggagccctccgccccgcgcaccatg
ctcgtgcccgcctgggagccgcccttccgccgccgacggccgccattgtcgtcgtcgtcg
tcgcggcaggagtcgcaagtgtgggatcctgagtccgtgcagatggatatgagcgacgtg
tttgattcgggcaccggtgggataacgccgcggatgcctggccctgcgaaggatttcgtg
agggggagcgtgaacagccgcccgttccgcccagggggcctgcatgatgatgcggctgcg
gctgctgctttggagaaggcatttccagagggtgcacgcaatggggattgggtgcgcgag
cttatgagcggagggccagctcaggttaatcctccaggattccgcaagggattggacctg
ggcaatttgaaggagtacaaaagccattggaagtgttaccaggatggagagcgtgtagat
gagcaatccacatcttcatcaaatgacaccatggataagtactcagtgcagtttgatgat
ctattcaagatagcatgggaggaagattctgacgacaaggtgccgcgtgaagatcatgtt
cagcaattggttggagatgaggagaccaatgatgttgataaacaaaatattagcaaactg
caaaatgcttctgaaactatagaaaatctggacattgaaaaacagaaaggtggtgcccaa
ggagatgtttctgaacctcaatcagacttggatcaaatgttattgtcctcagttaaagat
actagcagagattcaagtgggtcaggtgatggcagcatggcaaaggagggcaaggtttgg
gcacttgttggtggggatgaagacattgtgactaacttctataaacttgttccagatatg
gcaattgagtatccatttgaactagacaaattccagaaggaggctatatattatcttcag
aagggtgaatcagtctttgtggcagctcatacatcagcaggaaagacggttgttgcagag
tatgcattcgctttagcaacaaaacattgcacccgggctgtctatactgctcccattaaa
actatcagcaatcaaaaataccgagatttctgtgggaagtttgacgtgggacttctcaca
ggagatgtcagtatcagaccagaggcaacttgcttaattatgaccacagaaatattacgt
tcaatgctctacagaggtgctgacatcatacgtgatattgaatgggtaatttttgatgaa
gtgcattatgtaaatgatgcagagagaggtgtagtttgggaggaagttattataatgctc
ccgaagcacatcaacattgtccttctttcggcaacggttccaaacacagttgaatttgct
gactggattggtcgaacaaagcagaagaaaattcatgtcacatcgaccaacaaaaggcct
gttcccctggagcactgtttgttctactccggagaagtgttcaaaatatgtgagaaggat
gcatttcttactcaaggatatagagaagccaaggaggtttttaaaaagaaaaattcgagc
aagcttggaatgaaacctggttcaaaaccaggaacaactgcagtacgtgctggaactcaa
ggcagaaatccagatacatctagtagaggtagagatcagaaaaatccaaagcaccatcat
gccagctcatcagctgctgctgttcagcaaagcacctctgggccacggagatcagagtct
tcattctggatgcccctcataaataaccttctgaagaaatccctcgtgcctgtggtaatt
ttttgcttctcaaaaaatcgatgtgatagatcagcagagagcatgtttggtgcagatctc
accagtaactcagagaaaagtgaaatccgcctcttctgtgacaaggccttttcacgcctt
aaaggatctgataggaaccttccacaggttgtagggatacaaagccttctacgtagaggg
attggagtacaccatgctggacttcttcctatcgtcaaagaagttgttgaaatgctgttt
tgtcgtggcgtcatcaaggtgttattttccactgagacatttgcgatgggcgttaatgct
ccagcaaggacggtcgtgtttgattccttaagaaagtttgatggaaaagaacatcggaag
ttacttccaggggagtatattcaaatggccgggcgagctggtaggagagggcttgataac
attggtacagtgatcgttatgtgtcgtgatgaaattcccgaagaaagtgatttgaagaat
ttgattgttggaaaaccaactcgactagaatctcaatttcggttaacatacactatgata
ctgcatcttctacgtgtggaggaactcaaggtggaggacatgctaaagagaagttttgca
gaattccatgcacaaaagaatttgcctgagaaggaaaagttgcttctgcagatgcttcgt
caacccacgaagacaattgagtgcataaaaggagagccggctattgaagaatactacgag
atggtcttagaagctgaggcacacagggagtctattacggaagcaattatgcagttgcct
gcttctcaacagtcccttacacctggccgtctggttgttgttaaatcccaatcagatgat
gatcacttgctcggtgtaattgtgaaaactccatctgctgcactaaagcaatatgttgtt
cttgtactgaccggtgattgcacatcgtcagcactagctcctgattcatccaaccagaat
gaaaaggaagcaggggattttaaacaaggatactttgttatcccgaaaggaaaacgtagc
atggaagatgaatatttctcttctgtcagtacacggaaaggttcaggtgtcatcaatatc
aagctaccatacaagggagatgcatctggaatgggttttgaagttagagcaatagagaat
aaagagattatgaatatatgcgccagcaaaataaagattgatcaagtcagactccttgag
gatccaagcaaaacagtttactctaaaactgtccagatgcttataaaagagcaaccagac
ggaaacaagtatcctgctgctttagatgcaataaaagatctaaaaatgaaagacatgctt
ctcgttgagaactactatgcttaccagagattactgcaaaaaatgtctgaaaataagtgc
catggttgtataaaattaaaggagcatattgcattgatgaaggagcaaaaggtgtacaag
gatcagctgaatgatttgaaatatgaaatgtcagatgaggcacttcaacagatgccggag
tttcaaggcagaatcgatgtactaaaagaaatccattacattgattctgatctagtggtg
caacttaagggccgagtggcctgcgaaatgaattccggcgaggagttgatatcaaccgaa
tgtctgtttgagaatcagttggatgacctagaacctgaagaagccgtagctattatgtct
gcattggtcttccaacaaaggaatacatcagaaccatctcttaccccgaaactagcagat
gccagaaagaggatttatgatacagcaatcagattaggaaagctccagagagagttcaag
gtgcctgtagatcccgaggaatatgcccgtgataatctcaagttcggtcttgttgaagtc
gtctacgaatgggcaaaggggaccccatttgcagacatctgtgagctgacagatgtatct
gaaggtctcattgtaagaacaatcgtgcggttggatgaaacttgcagggagttcaggaat
gcagcttccataatggggaactccgcgttgcataagaaaatggagactgcgtccaatgcc
attaagcgtgacatcgtctttgcagcaagcttgtatgtcacagggatatga

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