Oryza sativa japonica (Japanese rice) (RefSeq): 4328375
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Entry
4328375 CDS
T01015
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH11
KO
K12599
antiviral helicase SKI2 [EC:
3.6.4.13
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4328375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4328375
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.4 Acting on acid anhydrides to facilitate cellular and subcellular movement
3.6.4.13 RNA helicase
4328375
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
4328375
mRNA degradation factors
3'-5' decay
Ski complex
4328375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
rRNA_proc-arch
DEAD
Ski2_N
Helicase_C
AAA_22
Motif
Other DBs
NCBI-GeneID:
4328375
NCBI-ProteinID:
XP_015626830
LinkDB
All DBs
Position
2:complement(3237585..3249855)
Genome browser
AA seq
1376 aa
AA seq
DB search
MGDLTTSSPASEVPFRVSFSGHGGHLRLDPTPNPPSPIPEFVLPPAYPLESPSSVKEYLE
ANYLNPELHLPTAADGARVWDLDWFELARPPLEPSAPRTMLVPAWEPPFRRRRPPLSSSS
SRQESQVWDPESVQMDMSDVFDSGTGGITPRMPGPAKDFVRGSVNSRPFRPGGLHDDAAA
AAALEKAFPEGARNGDWVRELMSGGPAQVNPPGFRKGLDLGNLKEYKSHWKCYQDGERVD
EQSTSSSNDTMDKYSVQFDDLFKIAWEEDSDDKVPREDHVQQLVGDEETNDVDKQNISKL
QNASETIENLDIEKQKGGAQGDVSEPQSDLDQMLLSSVKDTSRDSSGSGDGSMAKEGKVW
ALVGGDEDIVTNFYKLVPDMAIEYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAE
YAFALATKHCTRAVYTAPIKTISNQKYRDFCGKFDVGLLTGDVSIRPEATCLIMTTEILR
SMLYRGADIIRDIEWVIFDEVHYVNDAERGVVWEEVIIMLPKHINIVLLSATVPNTVEFA
DWIGRTKQKKIHVTSTNKRPVPLEHCLFYSGEVFKICEKDAFLTQGYREAKEVFKKKNSS
KLGMKPGSKPGTTAVRAGTQGRNPDTSSRGRDQKNPKHHHASSSAAAVQQSTSGPRRSES
SFWMPLINNLLKKSLVPVVIFCFSKNRCDRSAESMFGADLTSNSEKSEIRLFCDKAFSRL
KGSDRNLPQVVGIQSLLRRGIGVHHAGLLPIVKEVVEMLFCRGVIKVLFSTETFAMGVNA
PARTVVFDSLRKFDGKEHRKLLPGEYIQMAGRAGRRGLDNIGTVIVMCRDEIPEESDLKN
LIVGKPTRLESQFRLTYTMILHLLRVEELKVEDMLKRSFAEFHAQKNLPEKEKLLLQMLR
QPTKTIECIKGEPAIEEYYEMVLEAEAHRESITEAIMQLPASQQSLTPGRLVVVKSQSDD
DHLLGVIVKTPSAALKQYVVLVLTGDCTSSALAPDSSNQNEKEAGDFKQGYFVIPKGKRS
MEDEYFSSVSTRKGSGVINIKLPYKGDASGMGFEVRAIENKEIMNICASKIKIDQVRLLE
DPSKTVYSKTVQMLIKEQPDGNKYPAALDAIKDLKMKDMLLVENYYAYQRLLQKMSENKC
HGCIKLKEHIALMKEQKVYKDQLNDLKYEMSDEALQQMPEFQGRIDVLKEIHYIDSDLVV
QLKGRVACEMNSGEELISTECLFENQLDDLEPEEAVAIMSALVFQQRNTSEPSLTPKLAD
ARKRIYDTAIRLGKLQREFKVPVDPEEYARDNLKFGLVEVVYEWAKGTPFADICELTDVS
EGLIVRTIVRLDETCREFRNAASIMGNSALHKKMETASNAIKRDIVFAASLYVTGI
NT seq
4131 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacctcaccacctcgtcgccggcgagcgaggtgccgttccgcgtcagcttctcc
ggccatggcggccacctccgcctcgaccccacgcccaatccgcccagccctatacccgag
ttcgtcctgccgccggcgtacccgctggagagcccgagcagcgtgaaggagtacctcgag
gccaactacctcaacccggagctccacctccccaccgcggccgatggcgcgagggtgtgg
gatttggattggttcgagttggctaggccgccgctggagccctccgccccgcgcaccatg
ctcgtgcccgcctgggagccgcccttccgccgccgacggccgccattgtcgtcgtcgtcg
tcgcggcaggagtcgcaagtgtgggatcctgagtccgtgcagatggatatgagcgacgtg
tttgattcgggcaccggtgggataacgccgcggatgcctggccctgcgaaggatttcgtg
agggggagcgtgaacagccgcccgttccgcccagggggcctgcatgatgatgcggctgcg
gctgctgctttggagaaggcatttccagagggtgcacgcaatggggattgggtgcgcgag
cttatgagcggagggccagctcaggttaatcctccaggattccgcaagggattggacctg
ggcaatttgaaggagtacaaaagccattggaagtgttaccaggatggagagcgtgtagat
gagcaatccacatcttcatcaaatgacaccatggataagtactcagtgcagtttgatgat
ctattcaagatagcatgggaggaagattctgacgacaaggtgccgcgtgaagatcatgtt
cagcaattggttggagatgaggagaccaatgatgttgataaacaaaatattagcaaactg
caaaatgcttctgaaactatagaaaatctggacattgaaaaacagaaaggtggtgcccaa
ggagatgtttctgaacctcaatcagacttggatcaaatgttattgtcctcagttaaagat
actagcagagattcaagtgggtcaggtgatggcagcatggcaaaggagggcaaggtttgg
gcacttgttggtggggatgaagacattgtgactaacttctataaacttgttccagatatg
gcaattgagtatccatttgaactagacaaattccagaaggaggctatatattatcttcag
aagggtgaatcagtctttgtggcagctcatacatcagcaggaaagacggttgttgcagag
tatgcattcgctttagcaacaaaacattgcacccgggctgtctatactgctcccattaaa
actatcagcaatcaaaaataccgagatttctgtgggaagtttgacgtgggacttctcaca
ggagatgtcagtatcagaccagaggcaacttgcttaattatgaccacagaaatattacgt
tcaatgctctacagaggtgctgacatcatacgtgatattgaatgggtaatttttgatgaa
gtgcattatgtaaatgatgcagagagaggtgtagtttgggaggaagttattataatgctc
ccgaagcacatcaacattgtccttctttcggcaacggttccaaacacagttgaatttgct
gactggattggtcgaacaaagcagaagaaaattcatgtcacatcgaccaacaaaaggcct
gttcccctggagcactgtttgttctactccggagaagtgttcaaaatatgtgagaaggat
gcatttcttactcaaggatatagagaagccaaggaggtttttaaaaagaaaaattcgagc
aagcttggaatgaaacctggttcaaaaccaggaacaactgcagtacgtgctggaactcaa
ggcagaaatccagatacatctagtagaggtagagatcagaaaaatccaaagcaccatcat
gccagctcatcagctgctgctgttcagcaaagcacctctgggccacggagatcagagtct
tcattctggatgcccctcataaataaccttctgaagaaatccctcgtgcctgtggtaatt
ttttgcttctcaaaaaatcgatgtgatagatcagcagagagcatgtttggtgcagatctc
accagtaactcagagaaaagtgaaatccgcctcttctgtgacaaggccttttcacgcctt
aaaggatctgataggaaccttccacaggttgtagggatacaaagccttctacgtagaggg
attggagtacaccatgctggacttcttcctatcgtcaaagaagttgttgaaatgctgttt
tgtcgtggcgtcatcaaggtgttattttccactgagacatttgcgatgggcgttaatgct
ccagcaaggacggtcgtgtttgattccttaagaaagtttgatggaaaagaacatcggaag
ttacttccaggggagtatattcaaatggccgggcgagctggtaggagagggcttgataac
attggtacagtgatcgttatgtgtcgtgatgaaattcccgaagaaagtgatttgaagaat
ttgattgttggaaaaccaactcgactagaatctcaatttcggttaacatacactatgata
ctgcatcttctacgtgtggaggaactcaaggtggaggacatgctaaagagaagttttgca
gaattccatgcacaaaagaatttgcctgagaaggaaaagttgcttctgcagatgcttcgt
caacccacgaagacaattgagtgcataaaaggagagccggctattgaagaatactacgag
atggtcttagaagctgaggcacacagggagtctattacggaagcaattatgcagttgcct
gcttctcaacagtcccttacacctggccgtctggttgttgttaaatcccaatcagatgat
gatcacttgctcggtgtaattgtgaaaactccatctgctgcactaaagcaatatgttgtt
cttgtactgaccggtgattgcacatcgtcagcactagctcctgattcatccaaccagaat
gaaaaggaagcaggggattttaaacaaggatactttgttatcccgaaaggaaaacgtagc
atggaagatgaatatttctcttctgtcagtacacggaaaggttcaggtgtcatcaatatc
aagctaccatacaagggagatgcatctggaatgggttttgaagttagagcaatagagaat
aaagagattatgaatatatgcgccagcaaaataaagattgatcaagtcagactccttgag
gatccaagcaaaacagtttactctaaaactgtccagatgcttataaaagagcaaccagac
ggaaacaagtatcctgctgctttagatgcaataaaagatctaaaaatgaaagacatgctt
ctcgttgagaactactatgcttaccagagattactgcaaaaaatgtctgaaaataagtgc
catggttgtataaaattaaaggagcatattgcattgatgaaggagcaaaaggtgtacaag
gatcagctgaatgatttgaaatatgaaatgtcagatgaggcacttcaacagatgccggag
tttcaaggcagaatcgatgtactaaaagaaatccattacattgattctgatctagtggtg
caacttaagggccgagtggcctgcgaaatgaattccggcgaggagttgatatcaaccgaa
tgtctgtttgagaatcagttggatgacctagaacctgaagaagccgtagctattatgtct
gcattggtcttccaacaaaggaatacatcagaaccatctcttaccccgaaactagcagat
gccagaaagaggatttatgatacagcaatcagattaggaaagctccagagagagttcaag
gtgcctgtagatcccgaggaatatgcccgtgataatctcaagttcggtcttgttgaagtc
gtctacgaatgggcaaaggggaccccatttgcagacatctgtgagctgacagatgtatct
gaaggtctcattgtaagaacaatcgtgcggttggatgaaacttgcagggagttcaggaat
gcagcttccataatggggaactccgcgttgcataagaaaatggagactgcgtccaatgcc
attaagcgtgacatcgtctttgcagcaagcttgtatgtcacagggatatga
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