Oryza sativa japonica (Japanese rice): 4328597
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Entry
4328597 CDS
T01015
Name
(RefSeq) SWI/SNF complex subunit SWI3B
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4328597
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4328597
03036 Chromosome and associated proteins [BR:
osa03036
]
4328597
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4328597
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
4328597
PBAF complex
4328597
GBAF(ncBAF) complex
4328597
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
SWIRM-assoc_1
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
4328597
NCBI-ProteinID:
XP_015625317
UniProt:
A3A431
LinkDB
All DBs
Position
2:join(5248809..5249091,5249170..5249579,5251043..5251423,5251742..5251874,5252125..5252252,5252344..5252544)
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AA seq
511 aa
AA seq
DB search
MATPSMPAPAAEAAAAATTATANSMPLAPPQPPSSGAPFSQPPSTAGTVKTEAPPPPSTS
ASSAASAAAPAPAAAAAAAAAEESPCTITIPSYSAWFSYDSIHETERRLMPEFFEGEAAA
ASGSRGPEAYKYYRDTLVRRFRARPGRRLTLTEARRGLVGDVGSVRRVFDFLEEWGLINY
GASPSGAKQGRDKKEEAALSQSSLPIGATMPSKLCTGCRTVCGLAYFSCEKADISLCARC
YVRANYRPGLTSADFKRIEITEDAKSDWTDKETLHLLEAVLHYGEDWKKVSHHVGSRSEK
DCIARFTRLPFGEQFMGPKEDKIQFGNDCDLNEESGSHISKRLRLTPLADASNPIMAQVA
FLSAIVGSDVAVAAGQAAISAQSQVDISASETDSSINISKEEESSCTNGLSANDLLKEAS
ANAQVQLEKERKAIEQSLSDIVGVQMKEIQDKIRRFEQKELLMEKERKQLHCLKELLFSD
QLAVVQHQRRPPAVTTESKDDEKPKPVISIS
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atggccacgccgtcgatgccagcgccggcggccgaggcggcggcggcggcgactacggcg
acggcgaactccatgcctctcgctccgccgcagccgccgtcctcgggggcgccgttctcc
cagcccccctcgacggcaggcaccgtcaagacggaggcccctccgccgccatccacctcg
gcttcctcagccgcctccgccgccgcccccgcccctgccgccgccgccgccgccgccgcg
gccgaggagtcgccctgcaccatcaccatcccgagctattcagcgtggttctcctacgac
tccatccacgagaccgagcgccgcctcatgccggagttcttcgaaggggaggcggcggcg
gcgtccgggtccaggggcccggaggcttacaagtactaccgtgacaccctcgtgaggagg
ttccgggcgcggccggggcggcggctgacgctcaccgaggccaggcgtgggctcgtcgga
gatgtcggctccgtgcgtcgcgtgttcgacttccttgaggaatgggggctgataaactat
ggagcttcgccgtcgggagcgaagcaggggagagataagaaagaggaggcagcgttatcg
cagtcctctttgccgattggggcaacaatgcccagtaagctttgcaccgggtgccgcacc
gtgtgcgggcttgcttatttctcttgtgagaaggcagatataagcctctgtgctagatgc
tatgtccgtgccaattaccggccaggtcttacttcggcagacttcaagcgaattgaaatt
actgaggacgcaaaatcagattggacagataaagaaactcttcaccttcttgaggccgtc
ctgcattatggggaagactggaaaaaggtttctcatcatgttggtagtcgatcagaaaag
gactgcattgctagattcacccgattaccttttggggaacagttcatgggacccaaggag
gacaaaattcagtttgggaatgattgtgatctcaatgaagaatctggatcacatatctca
aaacgactacgcctcacgccactggctgatgctagcaatccaatcatggcccaggttgcg
ttcttgtcagccattgttggttcagatgttgctgtagctgcagggcaagcagctatttct
gcacagtcccaggttgatataagtgccagcgagactgattcttctatcaacatcagcaag
gaagaagaatcttcttgcacaaatggtctttcagccaatgatttgctcaaagaggcgtct
gccaacgcacaagtacaacttgaaaaggaacggaaggctatagagcagtctttatctgac
atagtgggtgttcagatgaaggaaatccaggataaaatacgtcgtttcgagcagaaggag
ctgctgatggagaaagagaggaagcaactccactgcttgaaggaattgctcttttctgat
cagctagctgttgtgcagcaccaacgcaggcccccggctgtcaccacagagagcaaggac
gatgagaaaccgaagcccgttatcagcataagttga
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