KEGG   Oryza sativa japonica (Japanese rice): 4328694
Entry
4328694           CDS       T01015                                 
Name
(RefSeq) coatomer subunit beta'-2
  KO
K17302  coatomer subunit beta'
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04131 Membrane trafficking [BR:osa04131]
    4328694
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4328694
Membrane trafficking [BR:osa04131]
 Endoplasmic reticulum (ER) - Golgi transport
  Retrieval pathways
   Coat protein complex I (COP-I)
    4328694
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of colorectal cancer cells
   4328694
SSDB
Motif
Pfam: B-prop_COPA_B_2nd TPR_COPA_B WD40 WD40_Prp19 WD40_WDHD1_1st WD40_CDC20-Fz WDR55 Beta-prop_EML_2 Beta-prop_WDR75_1st EIF3I Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EIPR1 Beta-prop_TEP1_C WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_RIG_2nd WDR90_beta-prop_4th Beta-prop_WDR19_1st NBCH_WD40 Beta-prop_IFT140_1st Beta-prop_HPS5 PEP5_VPS11_N Beta-prop_SPT8 WD40_RFWD3 Beta-prop_DCAF4 Beta-prop_WDR75_2nd Beta-prop_IFT122_1st TPR_12 Beta-prop_WDR35_TULP_N TPR_8 Beta-prop_Nup120_160 WD_LRWD1
Other DBs
NCBI-GeneID: 4328694
NCBI-ProteinID: NP_001403281
LinkDB
Position
2:complement(join(6155111..6155130,6155500..6155620,6155857..6155992,6156269..6156375,6156852..6156945,6157045..6157241,6158247..6158318,6158400..6158514,6158590..6158706,6158787..6158878,6158974..6159150,6159239..6159313,6159403..6159543,6160285..6160473,6160815..6160880,6160964..6161114,6161442..6161510,6162597..6162745,6162815..6162946,6163044..6163369,6163445..6163481,6164042..6164096,6164209..6164270,6164358..6164378,6164666..6164668))
AA seq 907 aa
MPLRLDIKRKLAQRSERVKSVDLHPTEPWILSSLYSGSVCIWNYQTQTMVKSFEVTELPV
RSSKFIARKQWIVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTQPFVLSSSDD
MLIKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDTNTFASASLDRTVKVWSLGSPDPNFT
LDGHSKGVNCVDYFTGGDRPYLITGSDDQTAKVWDYQTKSCVQTLEGHAHNVSAVCFHPE
LPITLTGSEDGTVRLWHSTTYRLENTLNYGLERVWALGYMKGSRRVVIGYDEGTIMIKIG
REVPVASMDSSGKIIWSKHNEIQTVNIKTIGADNEIADGERLPLAVKELGTCDLYPQSLR
HNPNGRFVVVCGDGEYIIYTALAWRNRSFGSALEFVWSVDGEYAVRESTSRIKIYSKNFQ
ERKSIRPPFSAERIFGGVLLAMCTNDFICFHDWAEGRMIRRIDVNVKNLYWADSGDLVTI
ASDTSFYILKYNRDVVSSHLDGGGSVGEEGVEDAFELLHEINERIRTGLWVGDCFIYNNS
SSRLNYCVGGEVTTLFHLDRQMYLLGYLANQSRVYLIDKQFNVVGYTLLLTMIEYKTLVM
RGDFDRANALLPSIPKEQHDSVARFLESQGMLEEALEIATDSNYRFDLAVQLGRLEVAKA
IAIEAQSESKWRQLGELAMSTGKLDMAEECLLHAMDLSGLLLLYSSLGDAEGLTKLTSMA
KEQGKNNVAFLCFFMLGKLEECLQLLIESNRIPEAALMSRSYLPSKVPEIVTLWKKDLQK
VNPKAAESLADPDEYPNLFEDWQIALNVEANVAPKRGIYPPAEEYIIHAERPNETLVEAF
KSMHIHLEEVLPDENGDDTHEAIEENGVEESQEDAVEVDVEADGSTDGAVLVNGNDTEEQ
WVLTPDQ
NT seq 2724 nt   +upstreamnt  +downstreamnt
atgccgctcaggttggatatcaagaggaagctcgcgcagaggtcggagagggtcaagtcc
gtggatctgcatccgaccgagccatggattttgtcgagtctgtattcagggagcgtctgc
atctggaactaccagacgcagacgatggtgaaatcatttgaagtcacagagttaccagtt
cggtcatctaaatttatcgcacggaaacaatggatagttgctggtgccgatgatatgttc
atacgtgtgtacaattacaatacgatggataaggtcaaggtttttgaagctcatacggat
tacatcaggtgtgtggctgttcacccaacccagccttttgtgctgtcatcatctgatgac
atgctgatcaagctttgggattgggataagggttggatgtgcactcaaatcttcgagggg
cattctcactatgttatgcaagtcacatttaacccgaaagataccaatacttttgctagt
gcttcccttgatcgcacagtaaaggtatggagtcttggttcccctgatcctaatttcaca
ttagatggccattcaaaaggtgtcaattgtgttgattactttactggtggtgatcgccca
tacttaattacaggctctgatgatcaaaccgcgaaggtttgggactatcaaacgaagagc
tgtgttcaaacgcttgaaggacatgcacataatgtctctgctgtttgtttccatccggag
ttacctataacacttactggctccgaggatgggacagttcgcttgtggcactctactacc
tacaggcttgagaacactcttaactatggccttgagcgagtgtgggctttaggatacatg
aagggttcaagaagggttgtgatcggatatgatgaagggacaataatgataaaaattggt
cgtgaagttcctgttgctagcatggacagcagtggaaaaatcatatggtcaaaacataat
gaaatccaaactgttaatatcaagactattggtgcagacaatgagattgcagatggtgag
cgcttacccttagctgtgaaggagttgggaacctgtgatctttatccacaaagcttaagg
cacaatccgaatgggagatttgttgttgtatgtggagatggagaatacataatctacact
gcattagcatggagaaatagatcattcgggtctgcacttgaatttgtttggtcagttgat
ggagaatatgctgtcagagaaagcacgtcgaggataaagatatacagtaaaaatttccag
gagagaaagagtataagaccaccattttctgcagaacgtatatttggtggagtattgctg
gctatgtgtacaaatgattttatttgcttccatgactgggcagagggcaggatgatacgc
agaattgatgtcaatgtgaaaaatctctattgggccgatagtggtgatttagtgacaatt
gcaagtgacacctcattctacattttgaagtacaatagggatgtagtttcttctcatttg
gatggagggggttcagttggcgaggaaggtgtggaagatgcctttgaactacttcatgag
atcaatgaacgcatccgaactggcctatgggttggtgattgttttatctacaacaattct
tcgtcacggcttaattactgtgtaggaggagaggtcacaaccttatttcacttggatcgg
caaatgtatttactgggatatcttgctaaccaaagccgtgtctatcttattgacaagcaa
tttaatgttgtggggtatactttactccttaccatgattgagtataaaacacttgtaatg
cgtggagacttcgatcgtgcaaacgctcttttaccatctataccaaaagaacaacatgac
agtgtggcacgtttcttggaatcacagggcatgttggaagaagcccttgagatagcaaca
gactctaattacagatttgacttggccgtgcagcttggtcggcttgaagttgcaaaggca
attgccattgaggcacaaagtgagtccaagtggaggcagttaggagagttagctatgtca
accggaaagcttgatatggcagaggagtgtcttctacatgctatggacctcagtggttta
ttacttctgtattcatcccttggtgatgctgaagggctaacaaaattaacatctatggct
aaagaacaagggaagaacaatgttgctttcctttgtttcttcatgctaggaaaacttgaa
gaatgccttcagttgttaatcgaaagtaatcgtataccagaagcagcattgatgtcgaga
tcttatcttccgagcaaagtccctgagattgtaacattatggaaaaaggatctccaaaag
gtaaaccccaaagcagcagaatcattggcagatcctgacgagtacccaaacttgtttgaa
gactggcaaattgctctcaatgtagaagctaatgtcgcgcccaaaaggggtatttatcca
ccagctgaggagtacattatccatgctgagaggcccaatgagactctggtggaagctttc
aaaagtatgcatatacatctagaggaggtgctgccagatgaaaatggagatgacactcac
gaggctattgaggaaaatggagtagaagagagccaagaagatgctgttgaggttgatgtt
gaagctgatggttcgactgatggtgctgtccttgtgaacggaaatgataccgaggaacag
tgggtattgactcctgaccaatag

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