Oryza sativa japonica (Japanese rice): 4328733
Help
Entry
4328733 CDS
T01015
Symbol
P0027A02.1
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
4328733 (P0027A02.1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4328733 (P0027A02.1)
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
4328733 (P0027A02.1)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
4328733 (P0027A02.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
CbiA
ABC_tran
ATP_bind_1
SRPRB
AAA_29
AAA_24
MMR_HSR1
MobB
AAA_21
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
4328733
NCBI-ProteinID:
NP_001396789
LinkDB
All DBs
Position
2:join(6591535..6591723,6591858..6591926,6592042..6592143,6592559..6592800,6593230..6593368,6593471..6593527,6594010..6594144,6594487..6594719,6595376..6595420,6595503..6595590)
Genome browser
AA seq
432 aa
AA seq
DB search
MAAAGGAAQPPRQYKLAPQSELRVEVPPDAPVRVRLVAGTAEVFGTELPPEGWVPVPPRS
KIAIFTWHGATVELDGVSESEYTSDETPMVVYVNTHAILDARRARARAAAAQGALPESSQ
GPRVIIVGPSDSGKSTLCKMLLSWAAKQGWKPTYVDLDIGQGSITIPGCISATPIEKPID
IVDGIPLEMPLAYFYGHPSPSVSPDVYRALMKELAQTLDKQFSGNSESRAAGMIINTMGW
VENLGLELLHNSIEIFKANVILVLGQEKLWKMLKDAAKNKPNIDVVKLHKSEGVVPRNPK
YRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVYKIGTHQAPKSALPIGAEPVADPTR
LVAVNISTDMVHTVLAVSYAKEPDEIVSSNVAGFIHVTDVDIQRKKLTYIAPCPGDLPSK
LLIASSLTWYEA
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgcgggcggggccgcgcagccgccgcggcagtacaagctggcgccgcagagc
gagctgcgggtggaggtgccccccgacgcgcccgtccgcgtccgcctcgtcgccggcacg
gcggaggtcttcggcaccgagctcccccccgagggctgggtccccgtcccgccccgctcc
aagatcgccattttcacctggcacggcgcgacggtggagctggacggggtcagcgagagc
gagtacacgtccgacgagacaccgatggtggtttatgtgaacacccacgcgatccttgac
gcgaggagggcgagggcgagggccgccgcggctcagggtgccctgccggagtcctcgcag
ggacccagagtgatcattgtggggccaagtgattctggaaaaagtactttgtgcaaaatg
ctccttagctgggctgccaagcagggctggaagcctacatatgtggatttagatattggc
caaggttcgataaccatacctggatgtatttcggcaacacccattgagaagcctatagat
atagttgatgggattcccttggagatgccgcttgcatacttttacggccatccaagccca
agtgttagtccagatgtttacagagctcttatgaaggagctagctcagacattggataaa
caattctctggaaattctgaatctagggcagcaggaatgattatcaatactatggggtgg
gttgaaaaccttggtttagagttacttcacaattcaattgagattttcaaggctaatgta
atattggtattgggacaggagaaactatggaagatgctaaaagatgcagcaaaaaataag
cccaacattgatgttgtaaaacttcataaatcagaaggtgttgttccgagaaatccaaag
taccgtcaaaagactagaagcttccgtatcaaggagtacttttatggcattgcgaatgat
ctagcaccacactcaaatgttgttaacttcagtgatgtatctgtttacaagattggcact
catcaagctcctaagtctgcactaccgattggtgcagagcctgtggcagaccctactcga
cttgttgctgttaacatcagcacagatatggtccacaccgtgcttgctgtttcatatgct
aaggaacctgatgaaatagtttccagcaatgttgccggattcatccacgtgacagatgtt
gacatccaaaggaagaagctcacatacattgcaccatgcccaggggacctgccaagtaag
ctgttaattgcgagctcgttaacgtggtacgaggcttga
DBGET
integrated database retrieval system
