Oryza sativa japonica (Japanese rice): 4328958
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Entry
4328958 CDS
T01015
Name
(RefSeq) U1 small nuclear ribonucleoprotein C-1
KO
K11095
U1 small nuclear ribonucleoprotein C
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4328958
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4328958
Spliceosome [BR:
osa03041
]
Complex A
U1 snRNP components
U1 snRNP specific factors
4328958
Complex B
4328958
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-U1
CLIP1_ZNF
Motif
Other DBs
NCBI-GeneID:
4328958
NCBI-ProteinID:
XP_015622805
UniProt:
A3A5C2
Q6ETX3
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All DBs
Position
2:complement(join(9533449..9533771,9535381..9535651,9535768..9535809,9536535..9536577,9536972..9536979))
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AA seq
228 aa
AA seq
DB search
MPRYYCDYCDTYLTHDSPSVRKQHNAGYKHKANVRTYYQQFEEQQTQSLIDQRIKEHLGQ
AAAFQVGAPFNQHLLSFPGGVPRPRLPILPTPGMPLGVPQVPGAPLMPGVRPPILPAPGI
PGYPGAPNVPTMPQTGAPPGSMPPGSMPPGSMPMQMAPLPRPPTLPPPTSGAPGAPIPNS
GAPPAMYQTNPPQPAGPTSGAPPPVSAPPPAAPPQAPFSYAQPPEGNH
NT seq
687 nt
NT seq
+upstream
nt +downstream
nt
atgcctcggtactattgcgactactgcgacacctacctgacccatgactctccatctgtc
cgtaaacagcacaatgctgggtacaaacataaggcaaatgttcgaacctactatcaacaa
tttgaggagcagcaaactcaaagcttgattgatcaaagaattaaagaacatcttggacaa
gctgcagctttccaagttggtgctcctttcaatcaacatcttctctcatttccaggaggt
gtgcctcgtcctcgtcttccaattctgccaacacctggcatgccacttggtgttcctcaa
gtacctggtgcacctttgatgccaggcgttaggcctcctattttgccagctcctggtatt
ccaggttatcctggtgctccaaatgttccaaccatgccacaaacaggcgccccacctggt
tccatgccgcctggctctatgccacctggttctatgcctatgcagatggcacctctccca
aggcctccgacactaccacctccaacatctggagccccaggggcccccatccccaacagt
ggggcacctccagccatgtatcaaacaaatccaccgcaacctgcaggcccaacttctggt
gctccacctccggtttctgctccacctccagcagcacctccacaggctcctttctcctat
gcacaacctcctgagggcaaccactga
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