Oryza sativa japonica (Japanese rice): 4329068
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Entry
4329068 CDS
T01015
Name
(RefSeq) UV-stimulated scaffold protein A homolog isoform X1
KO
K23720
UV-stimulated scaffold protein A
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
4329068
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4329068
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Other TCR factor
4329068
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UVSSA_N
DUF2043
IMS_C
VHS
Motif
Other DBs
NCBI-GeneID:
4329068
NCBI-ProteinID:
XP_015622917
LinkDB
All DBs
Position
2:join(11209382..11209627,11209701..11211623)
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AA seq
722 aa
AA seq
DB search
MPRPAASSSSRPPPEGEPASSRATSSAESSIASLIDRATSTTSPSVDPALLRAIKSAARA
SDGAIRDAFRILLSLMSKPHAHVRLLAFIIADELFMRSKLFRSLLTDVLDGFLPLAVGFR
RAHPLPPPAASATLLRKAAVQALERWHHLFGAHYRQLRLAVEYLKESARVQFPGLRAAVE
ARAAREARTQEILTAKVEQLRRNLAAIKAEIRSAIDEIRNGLDIIRIESEKFNNYANDED
EEQEIASLAMRSIRMASLMAGEWVPETQENEAVFDALRESYRLLVSKHLVTVQEWISVLV
RVNLADNRFRDSALKEFIDVKNEIRAVRNRCSELGLNLDNVHRRKGVQEEEDDDFWVEGN
IEVPSPGRVGTSADVASSSKDTRKGKKPVGGTDTDDGKAPNAGNSPQELDPERAKLHAEA
PVLPWSSVLDRWGSNRDALVNQRGLELESHWGRVDNDAVIPAAKIAELNVHSSIYREDPV
EILPCLAPLKKGGLCQRRDLKICPFHGPIVPRDAEGNPIHQSDGHCDAEGNPVGQTDGHY
DAAVSPIDPNEDSSDVRENMIMPDGSSDGECIYESSPSRTANINNDISDSDVGHDLGKIT
VEQLARQAVQNVRKRDRDDKKALEKAQRARIRQHNQDVLREAALASTSRSAADYDLPSPA
VSRRGRRGKTKGPTLASMLKKKVTSKDRIAERLLNARARDATIREVSHTEDMSYREAFPN
QW
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atgccgcgccccgccgcctcctcctccagccgccctccgccggaaggcgagccggcctcg
agccgcgcgacctcctctgcggagtcctccatcgcgtccctcatcgaccgcgccacctcc
accacctccccctccgtcgacccggccctcctccgcgccatcaagtccgccgcccgcgcc
tccgacggcgccatccgcgacgccttccggatcctcctctccctcatgtccaagccccac
gcccacgtgcggctgctcgcgttcatcatcgccgacgagctcttcatgcgctcgaagctc
ttccgctccctgctgaccgacgtgctggacggcttcctcccgctcgccgtcggcttccgc
cgcgcccacccgctcccgccgcccgctgcctccgcgaccctgctccgcaaggccgccgtc
caggcgctcgagcgctggcaccacctgttcggcgcgcactaccgccagctccgcctcgcc
gtcgagtacctcaaggagtccgcccgggtccagttccccggcctccgtgccgccgtcgag
gctcgtgccgcgcgggaggctcgcacgcaggagatcttaactgcaaaggtcgagcagttg
cgccgaaacctggcagcgattaaggctgaaatccgctccgcgattgatgagatccgcaat
gggttggatatcattcgcatcgagagtgaaaaatttaacaattatgcaaatgatgaggat
gaggagcaggagattgcctctttggcgatgcggagtattaggatggcttctttgatggct
ggggagtgggttcctgagactcaggagaatgaagcagttttcgacgcgttgagggagtca
tatcggctccttgtgtcaaagcatttggtcacagttcaggaatggatatctgtgctggtt
agggtcaatctcgcagataatcgtttcagagattctgctttgaaggaattcattgatgtt
aagaatgaaatacgagcggtgagaaatcggtgtagtgagcttggtcttaatcttgacaat
gtccataggcggaagggtgttcaggaggaagaggatgatgacttttgggttgaggggaat
attgaggttcctagccctggtagagtaggtaccagtgcagatgttgcaagtagcagcaag
gacactagaaagggaaagaagccagtaggtggcacggatactgatgatggcaaggcacct
aatgctggcaatagtcctcaagagctggatccagagagggcaaagctgcatgcagaagcc
cctgtgctgccatggagctctgttttggatcgttggggttctaacagggatgcacttgta
aaccaaaggggacttgagctcgagagccattggggaagggtggataatgatgctgttata
cctgctgcaaagattgcagaattaaatgttcatagttcaatatatagagaagatccagtt
gagattctaccatgccttgcacctctgaagaaaggaggcctttgccagagaagagatctc
aagatatgcccgtttcatgggcctattgttccacgagatgccgaaggaaatccaattcat
cagagtgatggccattgtgatgcagaaggaaatccagttgggcagactgatggccattat
gatgcagcagtaagtcctattgatccgaatgaagacagttctgatgtaagagaaaatatg
attatgccagatggaagcagtgatggtgaatgtatttatgagtcctctccttcaagaacg
gcaaacataaataatgacattagcgacagcgatgtaggtcatgacctcggtaaaattaca
gtggagcagttggcgagacaggcagtgcagaatgtccggaaaagagacagggatgacaaa
aaagctctggaaaaagcccaacgagcgagaattcgtcagcataatcaagatgttttgcgg
gaagcggctcttgcttcaacctcgcgctcagcggcagactatgacctcccttcgccagca
gtgtctcgacggggacgccgaggtaagacaaagggaccaacactggcatcgatgctgaag
aagaaagttacttccaaagatagaattgcagagaggcttctgaatgctcgagctagggat
gcgacaataagagaagtttcacatactgaagatatgagctacagagaagcattcccaaat
caatggtag
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