Oryza sativa japonica (Japanese rice): 4329118
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Entry
4329118 CDS
T01015
Name
(RefSeq) WD repeat-containing protein ATCSA-1 isoform X1
KO
K10570
DNA excision repair protein ERCC-8
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03420
Nucleotide excision repair
osa04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
4329118
09124 Replication and repair
03420 Nucleotide excision repair
4329118
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4329118
03400 DNA repair and recombination proteins [BR:
osa03400
]
4329118
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
4329118
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
4329118
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_C
Beta-prop_EIPR1
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SPT8
NBCH_WD40
WD40_RFWD3
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_IFT122_1st
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_RIG_1st
WDR54
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
4329118
NCBI-ProteinID:
XP_015627154
UniProt:
Q6Z0X1
LinkDB
All DBs
Position
2:join(12090148..12090300,12090460..12090717,12090830..12090989,12091078..12091253,12091632..12091869,12092001..12092155,12092230..12092319,12092402..12092473,12092628..12092687)
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AA seq
453 aa
AA seq
DB search
MWCEAVRRRERGELGARRFETAARARRTASLALSNRKEFTTPHNGAVNSLQVDLIERRYL
LSGASDGSAAIFDVQNAIEYEAGFIAKHRSILLVDKQHENGHKFAVSMAVWYPVDTGLFV
TASFDQYVKVWDTNSTQVVMDFKMPGKVYSAAMSPIATTHMLIATGSADVQVRLCDIASG
AFTHTLSGHRDGIMSLEWSTSSEWILMSGGCDGAIRFWDIRRAGCFLVLDQSRSQLGRRP
PFLEGTSDKDPLNSLQPSSSSKIYSAQQRTGKSKKQSHKLHKSQIPGHGHIQQRLHPGLS
SSQNRATAHYGAVTGLRTTTDGMYLLSSGSDSRLRLWDIDSGCNTLVNFEAMRLQTSKPL
QLAVTEDPSLVFIPCMASIKAYNLWSGMTFQTFRGHYEPVNCCYYSAQEQELYTGSNDRQ
ILVWSPSTPAFTEMEDDGKRQMDFVVDEDNWSD
NT seq
1362 nt
NT seq
+upstream
nt +downstream
nt
atgtggtgtgaggcggtgaggcggagggaacgcggggagcttggggcacggcgcttcgag
accgccgcccgggcgcgccgcaccgcctcactcgcactctccaaccgcaaggagttcacc
accccgcacaacggcgccgtcaactctctccaggttgatttgatagagcggcggtacctg
ctctcgggcgcatcggatggatcagccgctatatttgatgtgcagaatgcgatcgaatac
gaagctgggttcattgccaagcataggagcattctccttgtggacaagcagcatgaaaat
ggccacaagttcgcggtatctatggccgtatggtatcctgtggacactgggctgtttgtg
acagcttcttttgatcagtatgtcaaagtgtgggatactaattcgactcaagtcgtaatg
gattttaagatgcctggaaaagtgtacagtgcagcaatgtccccaattgcaacaacacat
atgctgatcgctactggaagtgcagatgttcaggtccgtttatgtgatattgcttctgga
gcctttacccacacgttgtctggtcatcgtgatggtatcatgtctttggagtggtctact
tcaagtgagtggattttgatgagcggtggttgtgatggagcaatacgattttgggacata
agacgagctggatgctttcttgttcttgatcaatcacggtctcaactaggaaggcggcct
ccttttcttgagggcacctcagataaggatcctttgaactctttacaaccttcatcttct
tcaaagatttactctgcacagcagaggacaggcaagagtaagaaacagtcacacaaattg
cacaaaagtcaaatccctggacatggacatatccaacagagattgcaccctggtttgtct
tctagtcaaaatcgtgcaacggcgcattatggtgctgttacgggattaagaacaactaca
gatgggatgtaccttcttagctcaggttctgattctcgcttaagactttgggatattgat
tcaggctgtaatactttggtcaattttgaagctatgcgattacagactagcaaaccacta
caattagctgtcactgaggatccatcacttgtattcatcccatgcatggcaagcattaag
gcgtacaatttatggtctggtatgacatttcaaacattccgtgggcactatgaacctgtt
aattgctgctactatagtgcacaagaacaagagctttatactggcagcaatgacaggcaa
attcttgtgtggtctccatcaactccagcatttactgaaatggaagatgatggcaagagg
caaatggattttgtagtcgatgaggataactggagcgactga
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