Oryza sativa japonica (Japanese rice) (RefSeq): 4329409
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Entry
4329409 CDS
T01015
Name
(RefSeq) DNA repair protein RAD50 isoform X1
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03440
Homologous recombination
osa03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4329409
03450 Non-homologous end-joining
4329409
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4329409
03400 DNA repair and recombination proteins [BR:
osa03400
]
4329409
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.-
3.6.-.-
4329409
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
4329409
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
4329409
BRCA1-C complex
4329409
NHEJ (non-homologous end-joining)
MRX complex
4329409
BRITE hierarchy
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_16
Motif
Other DBs
NCBI-GeneID:
4329409
NCBI-ProteinID:
XP_015626780
UniProt:
Q0E131
Q7Y239
LinkDB
All DBs
Position
2:complement(17489929..17507814)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFDPENKNVITFFKPLTLIVGPNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYRCADMDREIPALMGVSKAILENVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLHKDQAQEIKTFRLKLENLQTLKDQAYRLRDNIAQDQEKSDALKI
QMEELRTNVQGVEDKIRRTEKSLADLRRLQQEINSSTSARTTYFTLQQQQYAALSEENED
TDDELKEWQTKFEERMALLQNKISKLERDVDDENTTSSFLSKAINDLMRETGRLQAEADA
HMSVKHERDSAIRKIFTKHNLGPIPDAPLTDAAAMHLTNITKAKLSNLNDDLQDKKKSNE
AQKQFLWGRYLEVNTRYSEVVGQIESKVASKKGISRRMKDKESERDAAEMDLSKYNLPRI
DEKERHLQIEVERKALALGERNYDSIVNQKRTEIFSLDQKIKTLQWEKDSIISDSNDRVL
LDVKKDELEESKKKLKKIFDEHKDKIRIVFKGRTPSEKEVKKELSQAFGSVDREYNDLNS
KSQEAAQELKLVQMKILDARSHLSKLQKELDAKRSYVESKLQSITKMSADINMFPKHLKD
AMDEREKQKNNLSYAKGMRQMYEPFENLARELHMCPCCQRAFTPDEEDEFVKKQRTTCES
TADRMNKISLECSNAEDFFQQLNKLNATYEEFVKLGKEAIPLAEKNLKQLLADESEKAQT
FDDFVSVLAQVKMDKDAVQVLLQPVETIDRHVQEIQQLGPQVENLEYKLDVRGQGVKSLE
QIQLELNSVQRTRDTLNNEVDDLRDQQRTLTDGLTNAQMRWHDIREEKLKASGAVHKFQK
AEEDLGHLAEEKEKLTLEEKHLEESLGPLSKERESLLQEHEALKEKLDQEYHQLAERKRE
FQQEIDALETHNERIKGYLNSKKGEKLNELQEKHTQLQSDLQKSKERKEEKSAELSKNKE
LLKSQDQLKRNIDDNLNYRRTKDEVERLTHEIELLEDKILSIGSLSTIEADLKQHSQEKD
RLLSEYNRCQGTQSVYQSNISKHKLELKQTQYKDIEKRYFNQLLQLKTTEMANKDLDRYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDYISINSDSEGAGTRSYSYRVVMQT
GDAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAGALL
RIMESRKGQENFQLIVITHDERFAQLIGQRQLAEKYYRVSKDEHQHSKIEAQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgctgatcaaggggatccggagcttcgatccggagaacaag
aacgtcatcaccttcttcaagcccctcaccctcatcgttggccccaacggcgccggcaaa
accacgatcatcgagtgcctgaagctctcctgcaccggcgagctgcccccgaactcccgc
tccggccacaccttcgtgcacgaccccaaggtggcaggtgagacggaaacaaaagggcag
attaagctgcggtttaagacagcagcaggaaaggatgtggtgtgcatccgctccttccag
cttacccagaaggcatcaaaaatggagtttaaagcaattgagagcgtcctccagactata
aatccacacacgggcgagaaagtctgcctcagctacagatgtgctgatatggatagggag
attccagctttaatgggtgtatcaaaggctatactggagaatgttatattcgtgcaccaa
gatgagtccaattggcctttgcaggatccatcgacacttaagaagaagtttgacgatatc
ttttctgcgacccgctataccaaagctctcgaagtcataaaaaaacttcacaaggatcaa
gcacaggaaatcaagacttttaggttaaagttggagaaccttcagactctaaaagaccaa
gcatataggctccgtgacaatattgctcaagatcaagagaagtcagatgccttaaaaatt
caaatggaggaactgagaacaaacgttcaaggtgttgaagacaaaattcgtcgtactgaa
aaaagtttagctgacttgaggaggcttcaacaggaaattaactccagtacatctgctaga
actacatattttacacttcagcagcaacagtatgctgctctttctgaggaaaacgaagat
accgatgatgaactaaaggagtggcaaacgaaatttgaagaaagaatggcattgctgcaa
aataagatcagtaaactagaaagagatgtggatgatgaaaatacaacaagctccttcctt
tccaaggccataaatgatttgatgcgagaaacaggaaggctccaggcagaagctgacgct
cacatgtcagtgaaacacgaacgggattcagcaatcagaaagatcttcaccaaacataat
cttgggccaatacctgatgctcctttaactgatgctgctgccatgcaccttacaaacata
actaaagcaaaactgtcaaatcttaatgatgatttgcaggataagaagaaatctaatgag
gcacagaaacagtttctgtggggacgctatcttgaagtaaatactcgctactctgaagtt
gttggccagatagaatctaaggttgcctccaagaaaggtatttcaaggcgcatgaaagat
aaagagagtgaacgcgatgccgcggaaatggacctttcaaagtacaatcttccccgtatt
gatgaaaaggagagacatctgcaaattgaagttgaaaggaaagcacttgcgctgggagaa
aggaactatgattcaattgtaaatcagaagcgcacagagatatttagcttggaccagaag
ataaaaacacttcagtgggaaaaagacagcattattagtgattccaatgacagggtacta
ctagacgtgaagaaggatgaattggaagaaagcaagaagaaacttaaaaagatatttgat
gagcataaggacaaaatcagaattgtgtttaaagggaggactccttctgagaaggaagtc
aagaaggaacttagtcaagcctttgggtctgtagacagagaatacaatgatttgaactca
aaatcccaggaagcagcgcaagagctgaaactggtacagatgaaaatacttgatgctagg
agccacttgtcaaagcttcaaaaggaattggatgcaaagagaagctatgtggagtccaaa
cttcaatccattacgaagatgtctgctgacattaacatgtttcccaaacatctgaaagat
gccatggatgaaagagagaaacaaaaaaacaatttaagttacgcgaagggaatgcggcaa
atgtatgagccttttgaaaatttggctcgtgagctccacatgtgcccttgctgtcaacgt
gctttcacacctgatgaagaggatgaatttgtaaagaagcaaaggacaacgtgtgaaagt
actgcagatcgcatgaacaagatctcattggaatgctcaaatgctgaagactttttccag
caattgaataaactcaatgcaacttatgaggaatttgtgaagctgggaaaagaggctata
cctctagcagagaagaacttgaaacaacttttggcggatgaaagtgagaaggcacaaaca
tttgatgattttgtcagtgttcttgctcaagttaaaatggacaaggatgcagtgcaggta
ttgctacagccagttgaaacgattgataggcacgtacaagaaatacagcagttaggacca
caagttgaaaatcttgaatataagcttgatgttcgtggccaaggtgttaaatctttggag
caaatccagttggagttgaactctgtgcagaggacaagggacacattgaacaatgaagtg
gatgatctaagggatcaacaaagaacacttaccgatggtctgactaatgctcagatgcga
tggcatgatattagggaagagaagctaaaagcttcaggtgcagtgcacaaatttcaaaaa
gctgaagaggatttgggacatctagctgaggagaaagaaaaactaacattagaagagaag
catttagaggagtctcttggtccgttgtcaaaagagagagaaagcttgttgcaagagcat
gaagctttgaaggaaaagcttgatcaggagtatcatcagctggcagaaagaaaaagggaa
ttccagcaggaaattgatgcactcgagacacacaatgagcgtatcaaagggtacctgaat
tcaaagaagggcgagaagcttaatgaactacaggaaaaacatactcagttgcagtctgat
ctacagaaaagtaaggaaagaaaagaagaaaaatcggcggagttaagcaagaacaaagag
ctattgaagagccaagatcagttgaaaagaaacattgatgacaaccttaactacaggaga
acaaaggatgaagtggaacgacttactcatgaaatagaattacttgaggacaaaatactt
tccattggcagcctgtctactatagaagcggatcttaagcaacattcacaagaaaaagat
aggcttctttcagagtataataggtgtcaaggaacgcagtccgtttatcaaagtaatatt
tcaaaacacaagcttgaacttaaacagacgcagtacaaggatattgagaagcgatacttt
aaccaacttcttcaactaaagacaactgagatggcaaacaaggacttggaccgatactat
gctgctttggataaggctcttatgcggttccacaccatgaaaatggaggagataaacaaa
ataatcaaggaactgtggcaacagacatataggggccaagatatcgactatataagcatt
aattctgactctgagggtgctggcactcgatcatacagctatcgtgttgtcatgcaaaca
ggtgatgctgagctggaaatgcgagggcgctgcagtgccggccagaaggtgcttgcgtcg
cttataatcagactggcactggcagaaacattctgtctgaactgtggcatattagctcta
gatgagccgaccaccaatctagatgggcctaatgcagagagccttgctggtgcccttttg
agaataatggagagcaggaaagggcaggagaacttccagttgattgtgatcacccatgac
gagaggtttgctcagcttattggtcagaggcagctcgccgagaaatactaccgagtctcc
aaggatgaacaccagcacagcaaaatcgaagcccaggagatctttgactga
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integrated database retrieval system
