KEGG   Oryza sativa japonica (Japanese rice): 4329449
Entry
4329449           CDS       T01015                                 
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
  KO
K12625  U6 snRNA-associated Sm-like protein LSm6
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4329449
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4329449
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4329449
   03041 Spliceosome [BR:osa03041]
    4329449
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4329449
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     4329449
Spliceosome [BR:osa03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    4329449
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4329449
NCBI-ProteinID: NP_001403553
LinkDB
Position
2:complement(join(18693202..18693248,18693329..18693442,18697028..18697172))
AA seq 101 aa
MSSGGEKSGSGGGGGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI
AMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
NT seq 306 nt   +upstreamnt  +downstreamnt
atgagcagtggcggcgagaagtccggctcgggcggcggcggcggtggcggcggcggcggg
gcggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaag
ctcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacatt
gcaatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgct
ttcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcactgatggt
gcatga

KEGG   Oryza sativa japonica (Japanese rice): 4335668
Entry
4335668           CDS       T01015                                 
Name
(RefSeq) transposon Ty3-G Gag-Pol polyprotein
Organism
osa  Oryza sativa japonica (Japanese rice)
SSDB
Motif
Pfam: LSM SM-ATX
Other DBs
NCBI-GeneID: 4335668
NCBI-ProteinID: XP_066165493
LinkDB
Position
4:complement(join(19490607..19492262,19492339..19492344))
AA seq 553 aa
MGHQWASKLLGFDFAVEYKPGTTNVVADALSRRDEHLAEALALSAPQFSLFDELRHEVLT
SPELTAIRDDIAKGSKPPAWAFTDGLITFKGRIFVSASSPSLPAILELAHGLGHEGTQNT
LSRLRADFHLARDRAVVQEHARACFTCQQNKTEHLQPAGLLQSLPVPSAVWADIAMDFVE
GLPRVHGKTVILTVVDRFSKFAHFIPMAHPYTATSVAAAFFSEIVRLHGVPASIVSDRDP
VFTSTFWRELFRLAGVRLNLSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHWLRWLPW
AEYCYNTSYQSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDEFLREIRDRL
EQAQQTHKSAYDGKHRALEFSVGDWLWLRLLHRPIASLGVTGRGKLGPKFYGLYRVAERI
GSVAYRLQLPPGARLHDVFHVRLLKPFCGTPPDSVPPLPPIQHGQVCLQPAAVTQSRLAR
GVRQVLVQWKDKPSAEASWMPLDEFRTLHPDFQLEDELLLQGGEMSCGDCNTSVAATGGR
RQGVTRNSFLLLF
NT seq 1662 nt   +upstreamnt  +downstreamnt
atggggcaccaatgggcaagcaagctactcggcttcgactttgcagttgagtacaagccg
ggaacaacaaacgtggtggcagacgccctctccagaagggacgaacacctggctgaagct
ctcgccttgtcagcccctcagttctctctgtttgatgagctgcggcacgaggtgctcacg
tcgcccgagctgactgccattcgggatgacattgccaaggggtcaaaaccgccggcctgg
gcgttcacggacggcctcatcacgttcaaaggccgtatctttgtgtctgcatcatcacca
tccttgccggccatcctcgaactggcacacggcctggggcacgagggcacgcagaatacg
ctctctcgcctccgagctgacttccacctcgcacgggacagggcggtggtacaagagcat
gcccgagcctgtttcacgtgtcagcaaaacaagacggagcacctacaaccggccggcctc
ttgcaatccttgccggtgccatcggcggtgtgggctgacatcgccatggattttgtggag
ggtctgccacgcgtccatggcaagacggtcatcttaacggtggtggaccgtttctccaag
tttgcccactttataccaatggctcatccctacacggcaacctcggtggcagcggccttc
ttctcggaaattgttcgtctgcatggtgttccagcttctattgtcagtgatcgagatccg
gtcttcaccagcactttctggcgggagttgttcagattggccggagtacgactgaacttg
tcgtcggcatttcatcctcagtctgacggtcagtccgaggtgacgaacaagatcattgcg
atgtatctccgttgtcttaccggcgatcggccgcggcactggctacggtggcttccatgg
gcagagtactgctacaacacgtcctaccagtcatctcttcgcacgtcgccgttccgtgtg
gtttatggccgtgagccgcctacgctgcgcgcctatgaaccgggatccactcgtctgctg
gcagtccaacaggcgatgcaagatcgagatgaatttttgcgtgagattcgtgatcgcctg
gagcaagcgcagcagacacacaagtcggcgtatgatggcaagcatcgggcattggaattc
agtgtgggcgactggttgtggcttcgtttgctccatcgcccgattgcttcgctcggggtc
accggccgtggtaagttggggcctaaattttacgggctgtacagggttgccgagcggatt
ggttctgtggcatatcgtcttcagcttcctccgggtgctcgcttgcatgatgtgtttcac
gtgaggttgttgaagccattttgtggaactccgccggattctgttccaccgttaccgccc
attcaacacggccaagtgtgtttgcagcctgctgcagttacgcagagtcgattggctcgt
ggagttcgtcaagttcttgttcagtggaaggataagccttctgccgaagcttcatggatg
cctttggatgaatttcgcactcttcatccggattttcagctcgaggacgagctgcttctc
caggggggagagatgtcatgtggggattgcaatacaagcgtcgcagcaacaggcgggcga
cggcaaggcgtgacgaggaatagttttttacttctgttttga

DBGET integrated database retrieval system