Oryza sativa japonica (Japanese rice): 4329449
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Entry
4329449 CDS
T01015
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm6
KO
K12625
U6 snRNA-associated Sm-like protein LSm6
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4329449
09123 Folding, sorting and degradation
03018 RNA degradation
4329449
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4329449
03041 Spliceosome [BR:
osa03041
]
4329449
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
4329449
mRNA degradation factors
5'-3' decay
Lsm complex
4329449
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
4329449
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
4329449
NCBI-ProteinID:
NP_001403553
LinkDB
All DBs
Position
2:complement(join(18693202..18693248,18693329..18693442,18697028..18697172))
Genome browser
AA seq
101 aa
AA seq
DB search
MSSGGEKSGSGGGGGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNI
AMEQTEEYVNGQLKNKYGDAFIRGNNVLYISTSKRTLTDGA
NT seq
306 nt
NT seq
+upstream
nt +downstream
nt
atgagcagtggcggcgagaagtccggctcgggcggcggcggcggtggcggcggcggcggg
gcggtgaagacgccctccgacttcctcaagtccatcagggggcgccccgtcgtcgtcaag
ctcaactccggcgtcgactaccgcggtattttggcttgtcttgatggttacatgaacatt
gcaatggagcaaacggaagaatatgtcaatggtcagctgaagaacaagtacggtgacgct
ttcatacgaggaaacaatgttttatacatcagcacatcaaagcgtaccctcactgatggt
gcatga
Oryza sativa japonica (Japanese rice): 4335668
Help
Entry
4335668 CDS
T01015
Name
(RefSeq) transposon Ty3-G Gag-Pol polyprotein
Organism
osa
Oryza sativa japonica (Japanese rice)
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
SM-ATX
Motif
Other DBs
NCBI-GeneID:
4335668
NCBI-ProteinID:
XP_066165493
LinkDB
All DBs
Position
4:complement(join(19490607..19492262,19492339..19492344))
Genome browser
AA seq
553 aa
AA seq
DB search
MGHQWASKLLGFDFAVEYKPGTTNVVADALSRRDEHLAEALALSAPQFSLFDELRHEVLT
SPELTAIRDDIAKGSKPPAWAFTDGLITFKGRIFVSASSPSLPAILELAHGLGHEGTQNT
LSRLRADFHLARDRAVVQEHARACFTCQQNKTEHLQPAGLLQSLPVPSAVWADIAMDFVE
GLPRVHGKTVILTVVDRFSKFAHFIPMAHPYTATSVAAAFFSEIVRLHGVPASIVSDRDP
VFTSTFWRELFRLAGVRLNLSSAFHPQSDGQSEVTNKIIAMYLRCLTGDRPRHWLRWLPW
AEYCYNTSYQSSLRTSPFRVVYGREPPTLRAYEPGSTRLLAVQQAMQDRDEFLREIRDRL
EQAQQTHKSAYDGKHRALEFSVGDWLWLRLLHRPIASLGVTGRGKLGPKFYGLYRVAERI
GSVAYRLQLPPGARLHDVFHVRLLKPFCGTPPDSVPPLPPIQHGQVCLQPAAVTQSRLAR
GVRQVLVQWKDKPSAEASWMPLDEFRTLHPDFQLEDELLLQGGEMSCGDCNTSVAATGGR
RQGVTRNSFLLLF
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atggggcaccaatgggcaagcaagctactcggcttcgactttgcagttgagtacaagccg
ggaacaacaaacgtggtggcagacgccctctccagaagggacgaacacctggctgaagct
ctcgccttgtcagcccctcagttctctctgtttgatgagctgcggcacgaggtgctcacg
tcgcccgagctgactgccattcgggatgacattgccaaggggtcaaaaccgccggcctgg
gcgttcacggacggcctcatcacgttcaaaggccgtatctttgtgtctgcatcatcacca
tccttgccggccatcctcgaactggcacacggcctggggcacgagggcacgcagaatacg
ctctctcgcctccgagctgacttccacctcgcacgggacagggcggtggtacaagagcat
gcccgagcctgtttcacgtgtcagcaaaacaagacggagcacctacaaccggccggcctc
ttgcaatccttgccggtgccatcggcggtgtgggctgacatcgccatggattttgtggag
ggtctgccacgcgtccatggcaagacggtcatcttaacggtggtggaccgtttctccaag
tttgcccactttataccaatggctcatccctacacggcaacctcggtggcagcggccttc
ttctcggaaattgttcgtctgcatggtgttccagcttctattgtcagtgatcgagatccg
gtcttcaccagcactttctggcgggagttgttcagattggccggagtacgactgaacttg
tcgtcggcatttcatcctcagtctgacggtcagtccgaggtgacgaacaagatcattgcg
atgtatctccgttgtcttaccggcgatcggccgcggcactggctacggtggcttccatgg
gcagagtactgctacaacacgtcctaccagtcatctcttcgcacgtcgccgttccgtgtg
gtttatggccgtgagccgcctacgctgcgcgcctatgaaccgggatccactcgtctgctg
gcagtccaacaggcgatgcaagatcgagatgaatttttgcgtgagattcgtgatcgcctg
gagcaagcgcagcagacacacaagtcggcgtatgatggcaagcatcgggcattggaattc
agtgtgggcgactggttgtggcttcgtttgctccatcgcccgattgcttcgctcggggtc
accggccgtggtaagttggggcctaaattttacgggctgtacagggttgccgagcggatt
ggttctgtggcatatcgtcttcagcttcctccgggtgctcgcttgcatgatgtgtttcac
gtgaggttgttgaagccattttgtggaactccgccggattctgttccaccgttaccgccc
attcaacacggccaagtgtgtttgcagcctgctgcagttacgcagagtcgattggctcgt
ggagttcgtcaagttcttgttcagtggaaggataagccttctgccgaagcttcatggatg
cctttggatgaatttcgcactcttcatccggattttcagctcgaggacgagctgcttctc
caggggggagagatgtcatgtggggattgcaatacaagcgtcgcagcaacaggcgggcga
cggcaaggcgtgacgaggaatagttttttacttctgttttga
DBGET
integrated database retrieval system