Oryza sativa japonica (Japanese rice): 4329512
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Entry
4329512 CDS
T01015
Name
(RefSeq) WD repeat-containing protein LWD1
KO
K11805
DDB1- and CUL4-associated factor 7
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
4329512
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
osa04121
]
4329512
03036 Chromosome and associated proteins [BR:
osa03036
]
4329512
Ubiquitin system [BR:
osa04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
4329512
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.3/1.5)
4329512
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40
Beta-prop_Aladin
WD40_Gbeta
Beta-prop_RIG_2nd
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_TEP1_2nd
WDR55
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
Beta-prop_WDR41
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Motif
Other DBs
NCBI-GeneID:
4329512
NCBI-ProteinID:
XP_015627230
UniProt:
A0A8J8Y9D6
Q6H7B2
LinkDB
All DBs
Position
2:complement(19656441..19657676)
Genome browser
AA seq
411 aa
AA seq
DB search
MGGGGAGGDGEAWADQEQGNGGGRGGGGGEAKRSEIYTYEAGWHIYGMNWSVRRDKKYRL
AIASLLEQHNNHVQVVQLDESSGDIAPVLTFDHPYPPTKTMFVPDPHSVRPDLLATSADH
LRIWRIPSPDEAAAAAAASSNSGSVRCNGTASPDVELRCELNGNRNSDYCGPLTSFDWND
ADPRRIGTSSIDTTCTIWDVEREAVDTQLIAHDKEVYDIAWGGAGVFASVSADGSVRVFD
LRDKEHSTIIYESGSGGSSNSAGADGGAASPTPLVRLGWNKQDPRYMATIIMDSPKVVVL
DIRYPTLPVVELHRHHSPVNAIAWAPHSSCHICTAGDDSQALIWDLSSMGTGSNNGGNGN
GNAAAAAAAEGGLDPILAYTAGAEIEQLQWSATQPDWVAIAFSTKLQILRV
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atgggaggaggcggcgcgggtggggacggcgaggcgtgggcggatcaggagcaggggaac
ggcgggggccgcggcggcggcggcggggaggcgaagcggtcggagatctacacgtacgag
gccgggtggcacatctacggcatgaactggagcgtgcggcgcgacaagaagtaccggctc
gccatcgccagcctgctcgagcagcacaacaaccacgtccaggtggtccagctcgacgag
tcctccggcgacatcgcccccgtcctcaccttcgaccacccctaccctcccaccaagacc
atgttcgtcccggacccgcactccgtccgccccgacctcctcgccacctccgccgaccac
ctccgcatctggcgcatcccctccccggacgaggccgccgccgccgccgccgccagctcc
aactccggctccgtccgctgcaacggcaccgcctcgcccgacgtcgagctgcgctgcgag
ctcaacggcaaccgcaacagcgactactgcggcccgctcacctccttcgactggaacgac
gccgacccccgccgcatcgggacctcctccatcgacaccacctgcaccatctgggacgtc
gagcgggaggccgtcgacacccagctcattgcccatgacaaggaggtctacgacatcgcc
tggggcggtgccggcgtctttgcatccgtctccgccgacggctccgttcgcgtgtttgat
ctccgggacaaggagcattccacaattatctacgagtccggttctggcggcagctccaat
tcggcaggtgcagatggcggcgctgcctcgccaacaccgctggttaggttagggtggaac
aagcaggaccctaggtacatggcaaccatcatcatggatagccccaaggtggtcgtgctt
gatatccgctacccaacactaccggtggtcgagctccaccgccaccattcgcccgtcaac
gccatagcatgggcgccacactcctcttgtcacatttgcacagctggggatgactcgcag
gcccttatatgggacctgtcatccatgggcactgggagcaacaatggtggcaatggaaat
ggcaatgctgcagctgctgcggcagctgagggcggtcttgatcccatattggcgtacact
gctggggcagagattgagcagctccaatggtcagcgacccagcctgactgggtcgctatt
gcattctccactaaactgcagatcctcagggtctga
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