KEGG   Oryza sativa japonica (Japanese rice): 4329524
Entry
4329524           CDS       T01015                                 
Name
(RefSeq) DNA repair protein RAD5A isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:osa03400]
    4329524
DNA repair and recombination proteins [BR:osa03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    4329524
SSDB
Motif
Pfam: SNF2-rel_dom UBA_RAD5A Helicase_C HIRAN zf-C3HC4_3 zf-C3HC4 zf-RING_UBOX zf-C3HC4_2 zf-RING_2 Prok-RING_4 zf-C3HC4_4 zf-RING_5 RING_XB3-XBAT31 DEAD ResIII zf-RING_4 zf-ANAPC11 RING_ZNF598
Other DBs
NCBI-GeneID: 4329524
NCBI-ProteinID: XP_015627294
LinkDB
Position
2:join(19771922..19772467,19772535..19772668,19772763..19772898,19773370..19773423,19773492..19773635,19773720..19773871,19773962..19774046,19774147..19774416,19774580..19774726,19775390..19775545,19775723..19775790,19776516..19776638,19776710..19776809,19776890..19777002,19777213..19777485,19777574..19777774,19778763..19778856,19779464..19779535,19780479..19780577,19780754..19780876)
AA seq 1029 aa
MGKERGREEQVATVRAVLGDGTPEMDIIRALHMAGDDPTRAINILLDFPHGPPPPPPPSP
SPSPSPPAGKPTKPHPESTPPTKTPARSKPAAAAAEKPRPSVAPESTNGGGGGEHWWLVG
SVEMAGLSTCKGRRVASGDAVTFSFPNSPVAAAAGGKSRSGRPALVSCSSEIMRFSTPRH
GEVGRIPNEWARCLLPLLKEGKIKIDGVCKSAPEVLSIMDTVLLSVSVYINSSMFHGQKQ
STPKAARAATEDSTFHPLPALFKLTGLSPFKKAAFTPEDLYSRKRPLETKQSSAPATKLT
TEKLRLSSDGNEDDHAERIVSDSELDDIIGISDSSALEERDPPDALQCDLRPYQKQAFYW
MMQLEKGSSSQDAATTLHPCWEAYKLEDKRELVLYLNVFSGDATTEFPSTLQLARGGILA
DAMGLGKTIMTIALLLADSSKGCITTQHSTHICEEASGLGELPVQPHDDVKKLAIPFSFS
KLRKPKTPLIAGGNLIVCPMTLLGQWKAEIEAHATPGSVSIYVHYGQNRPKEANLIGQSD
IVLTTYGVLSSEFSNENSTESGGLYSIHWFRVVLDEAHMIKSPKSLISLAAAALTADRRW
CLTGTPIQNNLEDIYSLFRFLRVEPWRNWSLWHKLVQKPYEEGDERGLKLVQSILKPIML
RRNKNSTDKEGRPILILPPANIEVKYCDLSETEKDFYDALFRRSKVKFDQFVEQGRVLHN
YASILELLLRLRQCCDHPFLVLSRGDTQEFADLNKLAKRFLHGGNGAVNGDSSLPSRAYI
EEVVQELQKGEGECPICLEAFEDAVLTPCAHRLCRECLLSSWRSASAGLCPVCRKSMSKQ
DLITAPTDNRFQIDVEKNWVESSKISFLLQELEVLRTSGAKSIIFSQWTAFLDLLQIPLS
RHNFSFARLDGTLNLQQREKVIKEFSEDKSILVLLMSLKAGGVGINLTAASNAFVMDPWW
NPAVEEQAIMRIHRIGQTKSVSIKRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSAR
IEELKMLFS
NT seq 3090 nt   +upstreamnt  +downstreamnt
atggggaaggagaggggaagggaggagcaggtggcgacggtgcgcgcggtgctcggcgat
gggacgccggagatggacatcatccgcgcgctccacatggccggcgacgaccccaccagg
gccatcaacatcctcctcgactttccccacgggccgccgccgccgccgccgccgtcaccg
tcgccgtcgccttcgcctccggcgggtaaacccaccaaaccccaccccgaatcgaccccg
ccaaccaaaacccctgcccgttcgaagccggcggcggcggcggcagagaaacctaggccc
agtgtcgcgcccgaatccaccaatggcggcggcggcggcgaacattggtggttggtgggg
agcgtggagatggcggggctgtccacgtgcaagggccggcgcgttgcctccggggatgcc
gtcactttctcgttccccaactccccggtcgccgccgccgccgggggcaagagccgttcc
ggccgccccgccctcgtttcctgctcctccgagatcatgcgcttctccaccccgcgccat
ggggaggtcggtcgaatccccaatgaatgggcgaggtgcctgctcccccttctcaaggag
gggaagataaaaatcgatggcgtatgcaaatccgctcccgaagtacttagcatcatggac
actgtcctcttgtccgtaagtgtctacatcaacagctcaatgtttcatggccaaaagcaa
tcgacacccaaggctgctcgggctgctaccgaggattccacgtttcatccgctgcctgca
cttttcaagttaactggtctttcgccctttaagaaggcagcatttactccagaagatctc
tattccagaaagcgtccgcttgaaacaaagcagagcagtgcacctgccacaaagttgact
actgagaagttgagattatcgtctgatggaaacgaagatgatcatgctgaaagaattgtt
tcagattcagaattggatgatataattggaatctcagacagttctgctttggaggaaagg
gacccccctgatgctctgcagtgtgatttacgcccttatcagaagcaggcattttattgg
atgatgcagcttgagaaaggcagttcttctcaggatgcagctacaacgctgcacccttgt
tgggaggcatataaactcgaggacaagagggagcttgttttatacttgaatgtattttca
ggcgatgccaccactgaatttcctagtacactgcaacttgcaagaggagggattctggca
gatgcaatgggactggggaagactattatgacaatagctcttcttcttgccgactctagc
aaaggatgcatcactactcagcattctactcacatatgtgaagaagctagtggactgggt
gaattgccagttcagcctcatgatgatgtgaagaagctagctatccctttctcttttagt
aagcttaggaaacctaaaaccccgcttattgcaggcggcaatctaattgtctgcccaatg
acactacttggtcagtggaaggcagaaattgaagctcatgctacaccaggttctgtaagt
atatatgttcattatgggcaaaacagaccaaaagaagcaaaccttattggtcagagtgat
attgtcctgactacatatggtgttctgtcatcggaattttcaaacgagaattcaacagaa
agtgggggtctgtactctatacattggtttagagttgtgctggatgaagcacacatgata
aaatctcccaaaagtttaatatccctcgctgctgctgctcttacggctgatcggcgttgg
tgtcttactggtacacctattcagaacaacttggaggatatatacagccttttccggttt
ttgagggttgaaccgtggaggaactggtctttgtggcataaacttgtgcaaaaaccatat
gaagaaggcgatgaaagaggtttaaagctagtacagtccattttgaagccaataatgttg
agaaggaataaaaacagcacagacaaggaaggaagaccaatccttattttacccccagca
aatatcgaagtcaaatactgtgatttgtcagagactgagaaggatttctatgatgctctg
tttcgacgatctaaggtgaaatttgatcaattcgtggaacaaggaagggtcttgcacaat
tatgcttcaattttggagttgcttttgcgccttcggcagtgttgtgaccacccatttctt
gttcttagtcgtggagatacacaggagtttgctgacctaaacaaacttgcaaagcgtttc
ttgcatggtggtaatggtgctgtgaatggtgactcttctcttccctccagagcttacatt
gaggaagttgtccaggaactgcagaaaggtgaaggggagtgtcccatatgcctggaagcc
tttgaggatgctgtattgactccctgtgctcaccgtttatgccgagaatgtctcttgtct
agttggcggagtgcatcagcaggcctttgtcctgtctgtagaaagtctatgagcaagcag
gatcttattactgctccaactgacaatcgttttcaaattgatgtcgagaagaactgggtt
gagtcttccaagatttctttccttctacaggagctagaagttcttcgcacttctggtgca
aagagcatcatttttagccagtggactgcatttctggatctcttacaaattccactttcc
agacataatttctcatttgctagactggatggaaccttgaatcttcagcagagagagaaa
gtaatcaaggagttttctgaggacaaaagcattttggttctgcttatgtccctgaaagct
ggtggtgttggaataaacctaactgctgcatctaatgcatttgtcatggatccttggtgg
aatcctgctgttgaagaacaagctatcatgcggatccatcgaattggtcaaacaaagagt
gtttccatcaaaagattcatcgtcaagggcactgtcgaggaacgaatggaggctgtgcag
gctcgtaagcagcgaatgatttctggagctttgacagatcaggaagtacgcagcgcacgt
atagaagaactgaagatgcttttctcctga

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