Oryza sativa japonica (Japanese rice): 4329627
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Entry
4329627 CDS
T01015
Name
(RefSeq) exosome complex component RRP45A isoform X1
KO
K03678
exosome complex component RRP45
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4329627
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4329627
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4329627
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
4329627
NCBI-ProteinID:
XP_015622943
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All DBs
Position
2:complement(join(21207537..21207736,21208157..21208212,21208292..21208563,21208704..21208892,21208994..21209074,21209452..21209566,21209661..21209756,21209849..21210058,21210158..21210288))
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AA seq
449 aa
AA seq
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MDHHQRWHPTVNEREFIERALQSDLRVDGRRPFDFRRLKILFGREDGSAEVQLGDTRVMG
YATAQLVQPYKDRPNEGTLAIFTEFSPMADPAFEPGRPGESAIELGRVVDRGLRESRAVD
MESLCVVAGKHVWSVRVDLHILDNGGNLIDAANIAALAALSTFRRPECTVGGEDGQQVTV
HDPEVRDPLPLTIHHLPIAVTFAYFGEGNIMVIDPTYKEEAVMGGRMTATINSNGDVCSI
QKAGGEGVMSSVIMQCLRIASVKAADITSKIKNEVNSYTSAKALQKVKRLPASALKKDNA
PDVAMKESSDGALETQSTKPSSDGQQINKGDDEDHRNIKRNSSLTVDRTAKQKQTSKFIG
GPSNWDPYSKGVSLSSLRISQLPEPPSVVEDNKQEDVEPMLSECNPEPQSESRLTAGGSD
ETQEAISPKSLKDAVKPKHKIKKKQHSKS
NT seq
1350 nt
NT seq
+upstream
nt +downstream
nt
atggaccaccaccagcggtggcaccccacggtgaacgagcgcgagttcatcgagcgcgcc
ctccagtccgacctccgcgtcgacggccgccgccccttcgacttccgccgcctcaagatc
ctcttcggcagggaggacggctcggcggaggtgcagctcggggacacgcgcgtcatgggc
tacgccacggcgcagctggtgcagccgtacaaggacaggcccaacgaggggacgctcgcg
atattcaccgagttctcgcccatggccgaccccgccttcgagccggggcggccaggggag
tcggcgatcgagctcggtcgcgtcgtcgatcgcggcctaagggagagccgagccgtcgat
atggagtccctgtgtgttgttgctgggaagcatgtttggtcggtgcgcgtcgaccttcat
atcttggataatggagggaatctcattgatgcagctaacattgccgcgctggcagctctg
tctactttccggaggcctgaatgtacggtcggaggggaagatggtcaacaggttacagta
catgaccctgaggtaagggacccactccctttgacaattcatcatctccctattgctgtg
acatttgcatattttggcgagggcaacatcatggttattgatccgacatataaggaagaa
gctgttatgggaggacgaatgactgctacaattaactcaaacggtgatgtatgttccatc
cagaaagctggtggagagggtgtcatgtcaagtgttatcatgcagtgtttaagaattgct
tcagttaaagctgctgatataacaagcaaaataaagaatgaggttaactcatacacctct
gcgaaggcactgcagaaagtaaagcgtttgccagcctcagcactgaaaaaggataatgct
cctgatgtggctatgaaggaaagttctgatggtgcattggaaactcaaagtacaaaacca
tccagcgatggtcagcagataaacaaaggtgatgatgaggatcatcgaaatataaaacgg
aattcatccttgactgtggacagaactgctaaacaaaaacaaacatccaaattcattggt
ggtccatcaaattgggatccatactctaaaggagtttcattaagctccctcagaatttct
caattgcctgaaccaccatctgtggttgaggacaacaagcaggaggatgttgaaccaatg
ttatctgaatgtaatcctgagccgcaaagtgaatcaaggttgactgctggagggtcagat
gagacgcaggaagctatatcgccaaagagtctaaaagacgctgtcaagccaaaacacaaa
ataaagaaaaaacaacacagcaagagttaa
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