Oryza sativa japonica (Japanese rice): 4329738
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Entry
4329738 CDS
T01015
Name
(RefSeq) cryptochrome-1 isoform X1
KO
K12118
cryptochrome 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4329738
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GFIT
Motif
Pfam:
FAD_binding_7
DNA_photolyase
Cryptochrome_C
Motif
Other DBs
NCBI-GeneID:
4329738
NCBI-ProteinID:
XP_015625401
UniProt:
A0A0P0VKP4
Q6YXC2
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All DBs
Position
2:join(22457916..22458273,22458891..22459819,22459909..22460750,22460945..22460972)
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AA seq
718 aa
AA seq
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MSASPSSMSGAGAGEAGVRTVVWFRRDLRVEDNPALAAAARAAGEVVPVYVWAPEEDGPY
YPGRVSRWWLSQSLKHLDASLRRLGASRLVTRRSADAVVALIELVRSIGATHLFFNHLYD
PLSLVRDHRVKALLTAEGIAVQSFNADLLYEPWEVVDDDGCPFTMFAPFWDRCLCMPDPA
APLLPPKRIAPGELPARRCPSDELVFEDESERGSNALLARAWSPGWQNADKALAAFLNGP
LMDYSVNRKKADSASTSLLSPYLHFGELSVRKVFHQVRMKQLMWSNEGNHAGDESCVLFL
RSIGLREYSRYLTFNHPCSLEKPLLAHLRFFPWVVDEVYFKVWRQGRTGYPLVDAGMREL
WATGWLHDRIRVVVSSFFVKVLQLPWRWGMKYFWDTLLDADLESDALGWQYISGSLPDGR
ELDRIDNPQLEGYKFDPHGEYVRRWLPELARLPTEWIHHPWDAPESVLQAAGIELGSNYP
LPIVELDAAKTRLQDALSEMWELEAASRAAMENGMEEGLGDSSDVPPIAFPPELQMEVDR
APAQPTVHGPTTAGRRREDQMVPSMTSSLVRAETELSADFDNSMDSRPEVPSQVLFQPRM
EREETVDGGGGGGMVGRSNGGGHQGQHQQQQHNFQTTIHRARGVAPSTSEASSNWTGREG
GVVPVWSPPAASGPSDHYAADEADITSRSYLDRHPQSHTLMNWSQLSQSLTTGWEVEN
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgtcagcgtcgccgtcgtcgatgagcggcgccggcgccggcgaggcgggggtgcggacg
gtggtgtggttcaggcgggacctgcgcgtggaggacaacccggcgctggcggcggcggcg
cgggcggccggggaggtggtgccggtgtacgtgtgggcgccggaggaggacgggccgtac
tacccggggcgggtgtcccggtggtggctcagccagagcctcaagcacctggacgcctcg
ctccggcggctcggcgccagcaggctcgtcacccgccgctccgccgacgccgtcgtcgcg
ctcatcgagctcgtccgcagcatcggcgccacgcatctcttcttcaaccacctctacgac
ccgctgtcgctggtgagggaccaccgggtgaaggcgctgctgacggccgagggcatcgcc
gtgcagtcgttcaacgccgacctgctgtacgagccatgggaggtggtcgacgacgacggc
tgcccgttcaccatgttcgcgccgttctgggacaggtgcctgtgcatgcccgacccggcg
gcgccgctgctgccgcccaagaggatcgcgcccggcgagctgccggcgaggaggtgcccc
tccgacgagctggtgttcgaggacgagtccgagcgggggagcaacgcgctgctggcgagg
gcgtggtcgcccgggtggcagaacgccgacaaggcgctggccgcgttcctcaacgggcca
ctcatggactactcggtgaaccggaagaaggccgacagcgccagcacgtcactgctgtcg
ccgtacctgcacttcggcgagctcagcgtacgcaaggtgttccaccaggtgaggatgaag
cagctcatgtggagcaacgaggggaaccacgccggcgacgagagctgcgtcctcttcctc
cggtccatcggcctcagggagtactcgaggtacctcacgttcaaccacccgtgcagcctg
gagaagccactcctggcgcacctcaggttcttcccctgggtggtcgacgaggtgtacttc
aaggtgtggaggcaggggaggacagggtaccctctcgtcgacgccgggatgcgcgagctc
tgggccaccggctggctgcacgaccggatacgcgtcgtcgtctccagcttcttcgtcaag
gtgctccagcttccatggcgctgggggatgaagtacttctgggacaccctgctcgacgcc
gacctcgagagcgacgcgctcggctggcagtacatctccggctctctccccgatggccgt
gagctcgaccgcatcgacaaccctcagcttgaaggatacaagtttgatccgcacggggag
tatgtccggcgatggctgccggagctggcaaggctgccgacggagtggatacaccaccca
tgggacgcaccggagtcggtgctccaggctgcagggattgagctaggctccaactatcct
ctccccatcgtggagctggacgcggcgaagaccaggctgcaggatgcactgtcagagatg
tgggagctcgaggccgcgtcacgcgcagcgatggagaacggaatggaggagggcctcggc
gactcctccgacgtgccgccgatcgccttcccaccggagctgcagatggaagttgaccga
gcaccggcccagcctactgttcacggaccgacaacggctggccggcgacgagaggatcag
atggttcccagcatgacctcctcgctggtcagagctgaaacagaactttcagcggatttt
gacaacagcatggacagtaggccggaggtgccgtcgcaggtgctcttccagcctcggatg
gaaagggaagaaacagtggacggcggcggtggcggcggaatggtcggcaggagcaacggc
ggcggccaccaaggccaacaccagcagcaacagcacaactttcagactacaattcaccgg
gcacggggcgttgcgccgtctacgtcagaggcatcaagcaactggactgggagagaaggc
ggcgtggtgcccgtctggtcgcctccggcagcgtcaggcccctcagatcactacgctgcc
gatgaagctgacattaccagtagaagttatttggacaggcatccacagtcgcatacgttg
atgaactggagtcagctctcgcagtcattgacaacaggctgggaagtggaaaattaa
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