Entry |
|
Name |
(RefSeq) DNA mismatch repair protein PMS1
|
KO |
K10858 | DNA mismatch repair protein PMS2 |
|
Organism |
osa Oryza sativa japonica (Japanese rice)
|
Pathway |
|
Brite |
KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
4329835
03460 Fanconi anemia pathway
4329835
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:osa03400]
4329835
DNA repair and recombination proteins [BR:osa03400]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
MutL homologs
4329835
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
2:complement(join(23400909..23400931,23401413..23401512,23401795..23401976,23402057..23402160,23402860..23402925,23403100..23403173,23403309..23403377,23403970..23404096,23404184..23404434,23404813..23406039,23406231..23406554,23406637..23406861))
|
AA seq |
923 aa
MAGGSSPAIRPIGKSAVHRICSGQVIFDLSSAVKELVENSLDAGATTVEVTLRSYGEDSF
TVADNGTGISPTNFQALALKHHTSKISDFGDLASVATFGFRGEALSSLCALGKLTVETRT
KDEPVGTRLEFAHSGVVTGERKMARPVGTAVTVEKLFSTLPVRSKEFSRNIRKEYGKVIS
LLNAYALIAKGVRLVCTNTVGKNSKSAVLRTQGSSSLKDNIITVFGLNTFKCLQPFNVTI
SEGCQVDGFLSKPGPGSGRNSGDRQFFYVNGRPVDMPKVSKLVNELYRSSNAKQYPVAVL
NFCIPTTSYDVNVAPDKRKIFFSSEHAILLSLREGIENLYCPQQCSFSINSVEDPGKEMD
PAIDGSDEDMCLTEKENVSAPENDDDMDETDSDDEVTPENQKVPSSVTTRVATGSTPKDV
SPLSRGPPAQLDRSTLLSAYRYEQREKTPTRVKSYPAQANHVRTGLAAKSSPSSAVQPSI
MKFLSQNKRKHEDSCNLISEAPVLRRGTCLEQVRRTDLGVNSPTALTSRVSNIPEVNAPQ
GTNPLRHHSLQSFVPEMPEDSPQHSEPPNIVSHRDEVPQLRPCDVHATESEVDNQHDPCH
SKFGAPSRCSEVEPQNKLTNISLPDAHYDGHDTAAHSGQSSYPVMQFTLADLRRRRRHSF
MISHAKKGSFPEKSTRCYKAATLDNYVPDNEEGKSNSLAAATSELDKLFSKDDFGEMEVV
GQFNLGFIIGKLDQDLFIVDQHAADEKYNFENLSQSTTLNIQPLLQPLRLDLSPEEEVIV
SMNMSTIRKNGFVLAEDLHASPCNRYFIKAVPFSKNITFGAQDVKELISMLADSQGDCSI
ISSYKLDRTDSICPSRVRAMLASRACRMSTMIGDPLTKTEMKKILKNLTGLRSPWNCPHG
RPTMRHLADLHAIKTEGSKATFS |
NT seq |
2772 nt +upstreamnt +downstreamnt
atggccggcggctcgtcgccggcgatacggccgatcggcaagtcggcggtgcaccggatc
tgctccggccaggtcatcttcgacctctcctccgccgtcaaggagctcgtcgagaacagc
ctcgacgccggcgccaccaccgtcgaggtcaccctccgctcctacggcgaggactccttc
accgtcgccgacaacggcaccggcatctcccccaccaatttccaggcgctcgctctgaag
caccacacctccaagatctcggacttcggcgacctcgcctccgtcgccaccttcgggttc
cgcggggaggcgctcagctcgctctgcgcgctggggaagctgacggtcgagacgaggacc
aaggacgagcccgtcgggacgcgcctggagttcgcgcactcgggcgtggtgaccggcgag
aggaagatggcgcggccggtcgggaccgccgtgaccgtcgagaagctgttctccacgctg
ccggtccggagcaaggagttcagcaggaacattcggaaggagtacgggaaagtgatctcc
ttgctgaatgcctatgcgttgattgccaaaggggtcagattagtttgcacaaatactgtt
ggcaagaattctaaatcggcggtgcttaggactcaagggagcagttcactgaaagataat
atcattaccgtatttggtctgaacactttcaagtgcctgcagcccttcaatgtgacaatc
tcagaaggctgccaagttgatggctttctttccaaacctggacctggtagtggtcgcaat
tcaggggatagacagttcttctatgttaatggcagacctgtggatatgccaaaggtttcc
aaacttgtcaatgagctgtacagaagctcaaatgccaagcaataccctgtggctgtattg
aatttctgtattccaaccacatcttatgatgtgaatgttgcgcctgataagagaaaaatt
ttcttctcatctgagcatgccattttgctatctttacgggaaggtattgagaatctgtac
tgccctcaacaatgcagtttctccatcaacagcgttgaagatcctgggaaggaaatggac
ccagccatcgatgggtctgatgaagacatgtgtttaacagaaaaggagaatgtttcagct
cctgaaaatgacgatgacatggatgaaacagatagtgatgatgaggttacaccagagaat
cagaaagtgccttcttcagtgacaacaagggtagccactggatctacacccaaagatgtg
agccccttgtcaagaggcccacctgctcagcttgatagatctactttgctttcagcctac
cggtatgaacaacgagaaaagacgcctacacgagtaaaaagttatccagcacaagcaaat
catgttagaacagggcttgctgcaaagtcttctccttcaagtgctgttcaaccttctatt
atgaaatttctatcacaaaataaaaggaaacacgaagacagttgcaatcttatttctgaa
gctccagtgctgagaaggggaacatgcttggagcaagtgaggagaacagatttaggagtg
aattcaccaactgcactaacctcaagagtatctaatattccagaggttaatgcacctcaa
ggaacaaatcctttgcggcaccattccctgcaatcttttgtacctgagatgccagaagat
tcaccacagcattctgaaccacctaatattgtttctcatcgtgatgaagtgcctcagttg
cgtccatgtgatgttcacgctacagaatctgaagtggataaccagcatgatccatgccat
tccaagtttggtgctcccagtcgatgttcagaagtggaaccccaaaataaactgacaaat
atttccttgcctgatgctcattatgatggtcatgacactgcagcacattctggacaatca
tcttatccagttatgcaatttacacttgctgatcttagaagaagaagaaggcatagtttt
atgatatcacatgcaaaaaaaggaagttttcctgagaaatcaacaaggtgttataaagct
gcgacactggataactatgtaccagataacgaggagggaaaatcgaattctttagctgca
gccaccagcgagttagataagcttttcagtaaagatgactttggagaaatggaggttgtt
gggcagtttaatcttggttttatcattggaaagctggaccaggacctatttattgttgat
cagcatgctgctgatgagaagtacaactttgagaacctttcacagtcaacaactttaaac
atacagcctctccttcaaccactgagacttgacctatcaccagaggaagaagttatcgtt
tctatgaacatgagcactatcagaaagaacggttttgttttagcagaagatctgcatgct
tcaccttgcaaccgctattttataaaagccgttcccttcagcaagaatattacatttggt
gctcaagatgtgaaggagttaatctccatgcttgctgacagtcaaggtgactgttcaata
atcagcagttacaagctcgacagaactgattctatttgtccttcaagggttcgtgctatg
ttggcttcgagggcttgccgaatgtctaccatgataggtgatccattgacaaaaactgag
atgaagaagatacttaagaatttgacaggattgaggtccccttggaattgccctcatggg
aggccaacaatgcgccatctagcagatctccatgctataaaaactgaaggatcgaaggca
actttctcatga |