Oryza sativa japonica (Japanese rice) (RefSeq): 4329995
Help
Entry
4329995 CDS
T01015
Name
(RefSeq) polyribonucleotide nucleotidyltransferase 2, mitochondrial
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4329995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4329995
03016 Transfer RNA biogenesis [BR:
osa03016
]
4329995
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
4329995
Messenger RNA biogenesis [BR:
osa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
4329995
Transfer RNA biogenesis [BR:
osa03016
]
Prokaryotic type
tRNA degradation factors
4329995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
PNPase
S1
Urease_gamma
Motif
Other DBs
NCBI-GeneID:
4329995
NCBI-ProteinID:
XP_015625599
LinkDB
All DBs
Position
2:complement(24531291..24540073)
Genome browser
AA seq
976 aa
AA seq
DB search
MSMAVASLRLLARGGRRRARFPAPLSVPGGRAAFLSGAAEEVAQADAPPPPPPGRKVLES
FREEFEIGGRVISFETGKMARFANGSVVISMDDTHVLSTVAAAKSSEPVRDFLPLTVDYQ
EKQYAQGVIPTTYMRREGAPKERELLCGRIIDRPIRPLFPPGFYHEVQIMVNVISSDGKQ
DPDVMAANASSAALMLSDIPWNGPIGVIRVGRIDGNFVLNPTVDELGLSDLNLVYACSRD
KTLMIDVQAREITERDLQAGMKLAHAEAVKCINPQLRLAKRAGKKKKEYKISLISDKSYE
KIRTLSEAPIEEVFTDSTYGKFERGEALENITQSVKAKLEEECDEDSLKFLHKAVDTVRK
QVIRKRIIEKGLRVDGRQLDEVRPLYCESSTYPILHGSALFSRGDTQVLCTVTLGAPGDA
QRLDSIVGPPTKRFMLHYSFPPFSINEVAKRGGLNRREVGHGTLAEKALLAVLPPEGEFP
YTVRVNSEVMASDGSTSMASVCGGSMALMDAGIPVREHVAGVSVGLVSEVDQTTGDISSY
RILTDILGLEDHLGDMDFKIAGTRRGITAIQLDIKPAGIPLDIICESLEPARKARNQILD
RMDQEISSARAFNDGSSPRLATLSFSSDSLRKLLFHRKKIEQETGARVSVSDGTVTIVAK
TQPIMDKAIEKVEFLVGREIEVGRTYKGVVSSIKEYGAFVEFNGGQQGLLHISELSHDKV
SKVSDVVSVGQVLSLTCIGQDLRGNIKLSLKATLPHAHEKKDLASNHTDPLPSQEVVGWT
AVENMPSKDANAEPSISKDEDNMIEETPGCSTPAVIIRSAAECDAQDVTNDPKKKRPKVA
KSSPKLSKPASERQEVKRTSAKKTSGASTTAKKNKKEKADSSNDVLDAIPEQNKSNIMNY
SSPSNFRSGSMKLGDVVTAKVYQIRAYGLVLELSDGVRGMHKFAENGHKDFEVGEELLVK
CSSFNAKGIPVFSLLD
NT seq
2931 nt
NT seq
+upstream
nt +downstream
nt
atgtcgatggcggtggcctccctccgcctcctcgcgcgcggcggccgccgccgcgcccgc
ttccccgcgccgctctccgtcccgggaggccgcgcggcgttcctctccggcgcggccgag
gaggtcgcgcaggcggacgcgccgccgccgccgccgccgggacggaaggtgctggagagc
ttccgcgaggagttcgagatcggtgggcgcgtcatctccttcgagaccgggaagatggcc
cgcttcgccaacggctccgtcgtgatctccatggacgacacccatgtcctctccaccgtc
gccgccgccaagtcctccgaacccgtccgggacttcctcccactgactgttgattatcaa
gagaaacaatatgcccaaggtgttattccgacaacatatatgcggagggaaggtgcccct
aaggaaagggagcttctatgtgggcgtataatcgatcgaccaatacgaccattgtttcct
cctggattttaccatgaagtccagatcatggtaaatgttatatcgtcggatggaaaacaa
gacccagatgtgatggctgcaaatgcctcttcagctgcattaatgctatcggatatacct
tggaatggaccaattggagtaattcgtgtaggaagaattgatggaaattttgtgctgaac
ccaacggtggatgagttaggtttgagtgacctcaaccttgtttatgcgtgttctcgtgat
aaaacattaatgatagatgtgcaagctcgtgagattactgaaagggatcttcaagcagga
atgaaacttgcacacgctgaggcagttaaatgcatcaacccacaacttagattagctaag
agagctggcaaaaagaagaaagagtacaagatctcattgatttcagataaatcctatgag
aaaattagaacattatcagaagcacccattgaagaagtcttcactgattcaacatacggc
aagtttgagcgaggagaagccttggaaaatattacacaatctgtgaaagcaaagcttgaa
gaagaatgcgatgaggacagcttgaagtttcttcacaaggcagttgatacagtgagaaaa
caggttatacgcaaaagaataatcgagaaaggacttagagttgatggcaggcaacttgat
gaagttaggccactctactgtgaatccagcacatatccaatattgcatggatctgccctg
ttttcacgtggggatacacaggttttatgtacagttacccttggtgctcctggtgatgct
cagcgattggattcaattgttggtcctccaacaaagcgtttcatgcttcactacagcttt
ccaccattttcaataaatgaagttgcgaaacgtgggggcttgaatcgacgtgaagttgga
catggcacacttgcggagaaagcattgctcgctgtgcttcccccagaaggtgaatttcca
tatacagttcgggtaaattcagaagtcatggcttctgatggttcaacatcaatggcatca
gtatgtggaggaagtatggctttaatggatgctggaatacctgtaagggaacatgtggct
ggtgtttctgttggtcttgtcagtgaagtggaccagacaactggagatatttctagttat
cgcatattaacggatattttaggtcttgaggatcacttgggtgatatggacttcaaaatt
gcaggaacaaggagaggtattactgctattcaactggatataaaacctgctggaataccg
ttggacataatatgtgaaagtttggaacctgcacgaaaggctcgaaatcaaatccttgac
cgtatggaccaggaaataagttctgcacgtgcttttaatgatgggagctctcctcgatta
gctacactgagcttcagcagtgattctcttaggaaactgcttttccacaggaaaaaaatt
gagcaagaaacaggtgcacgggtatctgttagtgatggtacagtcactattgtagcaaaa
acccaaccaattatggataaggctatcgagaaggtagaatttcttgtgggtcgtgaaatt
gaagttggcagaacgtacaaaggtgttgtttcctcaataaaggagtacggtgcttttgtg
gaattcaatggtggacagcaaggtctacttcatatttctgagttgtcacatgataaggtg
tctaaggtctcggatgttgtatctgttggccaagtgctctcattgacatgcattggacag
gacttgaggggtaacattaaactttctcttaaagctaccctgccccatgcccatgaaaag
aaggatttagcaagtaatcatactgatcctttgccaagtcaagaagttgttggctggacg
gctgtagagaacatgcctagcaaggatgctaatgctgaaccatccatcagcaaagacgaa
gacaacatgattgaggagacacctgggtgttctactcctgcagttataattcgaagtgct
gctgaatgtgatgcgcaagatgttacaaatgatcctaagaagaaacgcccaaaggttgca
aagtcatctcctaagctatctaaaccagccagcgaaaggcaggaagttaagagaactagt
gctaagaaaacttcaggtgcatcaacaacggccaagaaaaataagaaagaaaaagctgac
tcttcaaatgatgtgctggatgccattccagaacaaaataaaagtaacatcatgaactat
tctagtccctcaaacttcaggtctgggtctatgaagctgggtgacgtagttacagcaaag
gtctaccagatacgagcctatggattagtacttgagttgagtgatggagttcgtggaatg
cataaatttgcggaaaatggacacaaggattttgaggtcggagaagaactacttgtgaaa
tgctcaagtttcaatgcaaagggaattccggtcttctcattgctagattag
Oryza sativa japonica (Japanese rice) (RefSeq): 4342497
Help
Entry
4342497 CDS
T01015
Name
(RefSeq) probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4342497
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4342497
03016 Transfer RNA biogenesis [BR:
osa03016
]
4342497
Enzymes [BR:
osa01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
4342497
Messenger RNA biogenesis [BR:
osa03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
4342497
Transfer RNA biogenesis [BR:
osa03016
]
Prokaryotic type
tRNA degradation factors
4342497
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
S1
KH_1
PNPase
KH_2
Motif
Other DBs
NCBI-GeneID:
4342497
NCBI-ProteinID:
XP_015647677
UniProt:
Q69LE7
LinkDB
All DBs
Position
7:complement(3645695..3672756)
Genome browser
AA seq
902 aa
AA seq
DB search
MLATPGALHHLLLLPPPPHTQLAFHHAVGGVPAALLPLPRPRRVAASASTSRRGGARRRA
AGARVRASVGEEAPPVVTEEASTSGGPTKFSTKIPVGDRHILVETGHIGRQASASVMVTD
GETIVYSSVCLADTPNDPSDFFPMSVHYQERLSAAGRTSGGFFKREGRAKDHEVLVCRLI
DRPLRPTMPKGFYYETQILSWVFSYDGIHSPDSLAITAAGVAMALSEVPNKQTIAGVRVG
MINDQFVVNPTTEQMDDSELDLVMAGTDSAILMIEGYCDFLTEEKLLQAVETGQGAIREI
CKAIDGLVQKCGKKKMFDAIDLPPPELYRHVEDISGDELVKALQIKEKILRRKALSALEE
KVITILSEQGYVAKDESSGVSENLADVIEEEDEDEVIVDGEVDEGEVHIKPVSRKPPRQL
FSEVDVKLVFKEVSSKFLRRRIVEGGKRSDGRSPCELRPINSQCGLLPRAHGSALFTRGE
TQALAVVTLGDYQMAQRIDNLVDTEESKSFYLQYTFPPSSVGEVGRIGAPNRREIGHGML
AERALEPILPPEEDFPYTIRVESTITESNGSSSMASVCGGCLALQDAGVPIKFPVAGIAM
GLVLDTLEFGGDGKPLILSDITGAEDASGDMDFKVAGNENGISAFQMDIKVVGITLPIME
HALLQARDGRKHILNEMSKCSPPPAKVLSPYAPLIHVMKVKPNKVNLIIGSGGKTIKSII
EETGVDAIDTGDDGTVKITARDLSSLEKSKAIIANLTMVPKVGEIYRNCEIKTIAPYGAF
VEIAPGREGLCHISELSSSWLAKAEDAFKVGDRIDVKLIEINDKGQLRLSSRALLPDANQ
ESSSKQQAGGSTREKAPQKDNLVKMTTRRPRRKKQAEASTAENNATASPKDLASQGSEMG
TE
NT seq
2709 nt
NT seq
+upstream
nt +downstream
nt
atgctcgcgacccccggcgcgctccaccacctcctcctcctcccgccgccgccgcacacg
caactcgccttccaccatgccgtcgggggcgtccccgcggcgctgctcccgctcccccgc
ccccgccgcgtagcagcgagcgcctccacctcgcgtcgcggtggcgcgcgaaggagagcg
gcgggggctagggttagggcttccgtgggcgaggaggcgccccccgtggtgaccgaggag
gcgagcacctccggcggcccgaccaagttctccacgaagattcccgtcggcgaccgccac
atactggtggagacaggccacatagggaggcaagcaagcgcttctgtaatggtcacggat
ggcgaaacaattgtttactcctccgtctgtcttgctgatacaccaaacgatccttctgat
tttttcccaatgtcagttcactatcaagaacgcctttcagctgctggaagaactagtggt
ggtttctttaaacgagaaggaagggcaaaagaccatgaggttttagtatgcagattgata
gataggcccctacgccctactatgcccaagggcttctactacgaaactcagattctatcc
tgggttttcagttatgatggtattcattcccccgatagcttggctatcacagctgctggt
gtagccatggcactctctgaagttccaaataaacaaacaattgctggagtgagagttggt
atgatcaatgatcagtttgttgttaacccaaccactgaacaaatggatgactcagagttg
gacttggtgatggctgggaccgatagtgccatactgatgatagagggctattgtgatttt
ctaactgaggagaagctacttcaagctgtggaaactgggcagggggcaattcgagaaatc
tgcaaagcaattgatggtcttgtccagaaatgtggaaagaagaaaatgttcgatgctatc
gacttaccaccccctgaactctacaggcatgttgaagatatttctggagatgagttggtg
aaggcgctgcaaataaaagagaagatcctcagaagaaaagctctttcagcattggaggag
aaagtaataacaatactttctgaacaaggatatgttgctaaagatgagtcatctggagtc
agtgaaaatttagctgatgtaattgaagaagaggatgaggatgaagttatagtggatggt
gaagtggatgaaggtgaagttcatatcaagccagtatcaaggaaacccccacgtcagtta
ttctcagaagttgacgtcaagctagtcttcaaggaagtttcatccaaatttttacggaga
cggattgtagagggtggaaagcgaagtgatggaaggagtccttgtgagcttcgtcccatt
aattctcaatgtggattacttcctcgagcacatggtagtgcactattcacaaggggagaa
acccaggcactggctgtggtcactttaggtgactatcagatggcacagcgaattgataac
cttgttgatactgaggaatcgaaaagtttctatcttcagtacacatttcctccatcatct
gttggtgaagttggtcgaattggagcacctaataggagggagataggacatggaatgctt
gcagaaagagccctggaaccaattttacctcctgaagaggattttccttacactattcga
gttgagagtactatcaccgaaagtaatggctcctccagcatggcttctgtctgtggaggt
tgtttagcacttcaagacgctggtgttccaataaagttccctgttgctggaatagcaatg
ggcttggttcttgatacactggaatttggtggagatggcaagccacttattctctctgat
attacgggtgctgaagatgcctctggtgatatggattttaaggttgctggtaatgaaaat
ggtatatctgctttccaaatggacatcaaggtagtggggataactctgcctataatggaa
cacgcccttcttcaagctagagatggtagaaaacatattttaaatgaaatgtcaaaatgt
tcacctccaccagcaaaagtactctctccatacgctcccttaatccatgtcatgaaggtc
aagccaaacaaggtgaatttaataattggttctggtggaaagacgataaaaagcataatt
gaggagactggcgttgatgctattgacactggagatgatggcacagtaaaaattaccgct
agggacttatcaagcttagagaagtcaaaagctataattgctaaccttaccatggttcca
aaagttggagaaatttacaggaactgcgagatcaaaacaattgcaccatatggagctttt
gttgaaattgcaccagggcgtgagggtttatgccatatcagtgagttaagttcgagttgg
ttggccaaggctgaggatgctttcaaagtcggcgatcgcattgatgtcaagctaattgag
ataaatgacaagggtcaacttcgcctaagttctcgagccttactgcctgatgcaaatcaa
gaatctagcagcaagcaacaagcaggtggttcaactagggagaaggcaccacagaaggat
aatcttgttaagatgacaacaagaagacccagacgtaagaagcaagcagaggcatctaca
gctgaaaacaatgcaactgcttcaccgaaggatttggcttcacaaggcagcgaaatggga
acggaatag
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