KEGG   Oryza sativa japonica (Japanese rice): 4330058
Entry
4330058           CDS       T01015                                 
Name
(RefSeq) regulator of nonsense transcripts UPF2
  KO
K14327  regulator of nonsense transcripts 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    4330058
   03015 mRNA surveillance pathway
    4330058
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330058
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Surveillance factors
    Surveillance complex
     4330058
   mRNA cycle factors
    P-body specific factors
     4330058
SSDB
Motif
Pfam: MIF4G Upf2 PsiA Xpo1
Other DBs
NCBI-GeneID: 4330058
NCBI-ProteinID: XP_015626421
UniProt: Q6H470
LinkDB
Position
2:complement(join(25759973..25760947,25761844..25762029,25762527..25762697,25762958..25763176,25763284..25763535,25763625..25763726,25764310..25764507,25764585..25764869,25765463..25765532,25765620..25765793,25766648..25766775,25766882..25766986,25767509..25767853,25768184..25768386,25768787..25768868,25769490..25769567))
AA seq 1190 aa
MENTQNENSKEAKQDDETRQNKQDDEEARLEEYKKLVDQKTALRRSNLNSERPDANYLRT
LDSSIKRNTTVIKKLKTINDEQKDGLMDELKSVNLSKFVSEAVSYICEAKLRSADIQAAV
QVCSLLHQRYKDFSPCLTQGLLKVFFPGKSGEDLDADKNSRAMKKRSTLKLLIELYFVGI
VEDASIFVNIIKDLTSLEHLKDRETTQANLSLLSAFARQGRFFIGLQSHGQEAYDELFKD
LNVTADQKKFFKKALNTYYDAVAELLQSEHASLRLMEAENAKVLTAKGELSDENTASYEK
LRKSFDHLQRGVSSLAEALDMQPPVMPDDGNTTRVTTGSDVAPSTAKEPSALEPIWDDED
TKAFYESLPDLRAFVPAVLLGEAEPKLNEKGREQSEPVAEQDTDVHDNPQTSSITEYHLE
GKADDGVKDSEEKDKDKGKGVDKEKSKEKDFDRKTEREKEKIRAVDGASLDNLLQRLPGC
VSRDLIDQLTVEFCYLNSKASRKKLVRTLFNVPRTSLELLPYYSRLVATLSTCMKDVPSM
LLSMLEEEFNFLINKKDQINIETKIKNIRFIGELCKFKIAPAALVFSCLKSCLDDFSHHN
IDVACNLLETCGRFLYRSPETTIRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCKPPE
RSARVSKVRPPLHQYIRKLLFSDLDKSSVEHVLRQLRKLPWVECQQYLIKCFLKVHKGKY
SHVHLIALLTAGLSRHHDDFAVSVVDEVLEETRVGLELNDYGMQQRRLAHMRFLGELYSY
KHIDSSVVFETLYLIIVFGHGTPEQDVLDPPEDCFRIRLIITLLQTCGHYFNRGSSKRKL
DKFLLHFQRYIISKGPLPLDIEFDVQDLFAELRPNMARYSSVEELDAALLELEESERAAS
VEKPENEKLSDSESQKVQPHDTAFSANGRSSANGAEENGKDHEGADSESYSDSGSIDGHE
DEEDLMFEDKSNDASENEGDDEDDGIPAGSDEDEGVEVRHKVVQVDPKELEDFDRELKAL
LQESLESRKSEVRPRATLNMMVPMNVLEGSKDPRAVESESGEETVDEEGGSAGGGSKVRV
KVLMKKGHKQQTKQMFVPGDCSLVQSTKQQEAAELEEKQSIKRRILEYNEREEEEMNGGS
SQMGNWGQGGSNTGSSIRSGGRGIWDGSIRGGRQRHHIAGGFYHSYGRRR
NT seq 3573 nt   +upstreamnt  +downstreamnt
atggagaacactcagaatgagaacagcaaggaagccaagcaagatgacgagacccgccaa
aacaagcaagatgatgaggaggctcgtcttgaagaatacaaaaaacttgttgatcaaaag
actgccctccgccggagcaacctaaactctgaaaggcctgatgcaaattacttgaggact
cttgactccagtattaagcgaaatacaacagttataaagaaactcaaaacaataaatgat
gaacagaaggatggattgatggatgagttgaaaagtgtgaacttgagcaaatttgtcagc
gaggcagtttcttatatttgtgaggccaaacttcgttctgctgatatacaagctgctgtt
caggtttgctccttacttcatcaaagatacaaggatttctctccttgtcttacacaaggg
ctactaaaggtattctttcctgggaaatctggagaagatttggacgcagacaaaaactca
agagctatgaagaagagaagcacactgaaacttctaattgaactgtattttgttgggatt
gttgaagatgctagtatatttgtaaacattataaaagatcttacatcattagaacacttg
aaggaccgggaaacaactcaggcaaatttgtctcttctttctgcctttgctcgtcaaggg
agatttttcatagggttacagtctcatggtcaagaagcttatgatgagttatttaaggat
ctaaatgttacggctgatcagaaaaagttcttcaagaaagccttgaacacttattatgat
gctgtagctgaactactccaatcagaacatgcgtctcttcgtctgatggaggcagagaat
gcaaaagttttaactgccaaaggtgaactaagcgacgagaacactgcttcgtatgaaaaa
ctccggaagtcttttgatcatttacaacgtggtgtatcctcgttagctgaagctcttgac
atgcagccccccgtgatgccagatgatggaaacacaactagagttactacaggaagtgat
gtagccccgtctactgcaaaagaaccgtctgcactggaacctatttgggatgatgaggat
acaaaagctttttatgaatctttacctgatctcagagcatttgtgcccgctgtgttattg
ggagaggctgaaccaaagttgaatgagaagggtcgtgaacaatctgaacccgtcgcagaa
caagatactgacgtacatgacaatcctcaaacttcttccatcactgaatatcatctggaa
ggaaaggcagatgatggagtgaaggatagtgaagaaaaagataaagataagggaaaaggt
gtagacaaggaaaaatctaaagagaaggattttgacagaaaaactgaaagagagaaggag
aaaataagagctgtggatggtgcaagtttagacaacctccttcagaggctgccaggatgt
gttagccgtgatcttattgaccaattgacggttgagttttgctacctaaattctaaagca
agtcgaaagaaactcgtgcggacgttattcaatgttccaaggacttcactggaacttttg
ccttactattctcggttggtggctacactttcaacatgtatgaaagatgttccaagtatg
cttctttctatgcttgaagaggagttcaacttcttaataaataagaaggatcagatcaac
attgaaacaaaaataaaaaacattaggtttattggggagttgtgcaaattcaaaattgca
cctgcagctcttgtttttagctgcttgaagtcctgcctagatgatttcagtcatcataac
attgatgtggcctgcaatctactcgagacttgtggacgttttttgtatcgttcacctgaa
actactattcgtatggctaacatgttggagatactgatgcgattgaaaaatgtgaagaat
ttggatccccgccacagtacacttgtagaaaatgcctattacctttgtaaaccacctgaa
agatctgctcgagtttcaaaagttcggccacctctgcatcaatacatacggaaattgctt
ttctccgatcttgataaatcaagtgttgaacatgttcttcgccaattacgcaagctacct
tgggtggagtgccaacaataccttataaagtgttttctaaaggttcacaagggaaaatac
agccatgttcatctgattgcccttctaactgctggtcttagtcgccatcatgatgacttt
gctgtttcagtggtagatgaggttttagaggagacaagggtagggctggagctgaatgac
tatggaatgcaacaaaggcgtctcgcccacatgagattccttggagagctatacagctac
aagcatattgattcatcagttgtattcgagactctgtaccttatcatcgtatttggtcat
ggaactcctgagcaagatgtgttggatccaccagaagattgcttcaggatcaggttaatc
attacacttctgcagacttgtggccactatttcaacagaggctcttcaaaaagaaagctt
gacaagttcttgctgcattttcaaagatatattattagtaaagggcccttaccacttgac
atagaatttgacgttcaggatttgtttgctgagctaagacccaacatggctaggtattca
tcagtagaagaactggatgctgcattacttgagctcgaagaaagtgagcgtgcagcctca
gttgagaagcctgaaaatgaaaagctctcagacagcgaatctcagaaggtgcagccacat
gatactgccttttctgctaacggcaggagctcagcaaatggagccgaggaaaatggcaag
gatcatgaaggagctgacagtgaaagttattcagatagtggcagcattgatggtcatgaa
gacgaggaagatcttatgttcgaggataaatcaaatgacgcatctgagaatgaaggtgat
gatgaggatgatggcattcctgctggttctgatgaagatgaaggtgttgaggttagacat
aaagtcgtgcaagttgatcctaaggagctagaagactttgatcgggagctgaaagccctt
cttcaggagagcttggagtcacgtaaatcagaggtacggcccagggccactttgaacatg
atggtaccaatgaatgtccttgagggttctaaggacccaagggctgtcgagtccgagagt
ggagaagaaactgtggatgaagagggtggtagtgctgggggtggcagcaaggtgcgtgtt
aaggtgctaatgaagaaagggcacaagcagcaaacaaaacagatgttcgttcctggtgac
tgctcacttgtgcaaagcacaaagcagcaagaggctgctgagcttgaggagaagcagagt
attaagcgcaggatcctggaatacaatgaaagggaggaagaagaaatgaatggtggatcg
tcacagatgggaaattggggtcaaggaggaagcaacaccggcagcagtatcagatcaggt
ggacggggcatttgggatggttcgatcagaggaggtcggcagcggcaccacattgctggt
ggtttctaccatagttatggaaggagacgatga

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