| Entry |
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| Symbol |
OsJ_07694, OsSHOC1, SHOC1
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| Name |
(RefSeq) protein SHORTAGE IN CHIASMATA 1 homolog
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| KO |
| K28108 | shortage in chiasmata 1 |
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| Organism |
osa Oryza sativa japonica (Japanese rice)
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| Brite |
KEGG Orthology (KO) [BR:osa00001]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:osa03036]
4330127 (OsJ_07694)
Chromosome and associated proteins [BR:osa03036]
Eukaryotic type
Meiosis-specific proteins
Others
4330127 (OsJ_07694)
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| SSDB |
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| Other DBs |
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| LinkDB |
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| Position |
2:complement(join(26292579..26292695,26292780..26294282,26294449..26295186,26295565..26295772,26296308..26298262,26298721..26298813,26298897..26298953,26299042..26299125,26299207..26299290,26299475..26299756))
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| AA seq |
1706 aa
MRTRFLATDYFAPSSSSAAGKALALEFFSFPSLPVPALPPDPHFLPFTSADELPAATVAD
DGLGPLPIASALSDFLAAVIPQALPVPTVPAADEVLDDFLYDRGGYGEDFSSWEFGAFRI
PKGYGVINREKDEKGEGSRSDGLEISSVMKRWEQLKELRFEVVEVDLLMALQEDIASFGE
EESGGGVTLLLRVPDMKIHLDFIDIETDIKIRYQSDLPESVYQVEKVPVKDNDGNGHSSL
REDCCLEIAALDHGAVIPRLEVSRNSWELDDCLTETDRYGVFDNVVRHLDEAQIQHSVFK
STEFLRSTDMDMLTFVCEDAPCHDIQVDKPAEIKAAVEMDVVRINGNILLEKNSALYPLK
PDGTCSDLPCSILLEEVQIIDFPSDNVFKMLVQSETNKMNISDEIFKDDFDPARRLYESM
VSCELALVDDTFRSLPTPILNDDIAVRSRVPPIQEILCSLKPHPLSASDGIYLDWHLLLE
GPCNREICCSYASMVEEAKTCHLSSELQRSCQSTSVFVSDFLEDFQRSPKLQDEDKHSDI
YVPAPLSHDPQKLEATQKCEQEGGTRNHSSMKRPSPEKSSSFPELISHSGDLNFYLNVRS
ATKSGTNNENTSTLDVPHSEEQALSLSTRAKVDKLIEIHPVSPSNLIQGLIEQIHASYTS
ALQESTYWRHSFSDEQGLGISKQKLLELITGEGSEGSYNHCEHKDKMELIVLYALKQVAY
YLCFFGLHAAHLYISNLTRSLENTPERLKHILWSISEAQRKSERQLFESHPSLSCIETIL
RSNKQIDQKILIVADRAFWLPLGQKLASMRMTFVEFGQNPATTFVDLVNKTNSTAWVLEE
LLKSDCILLDNKNIPASFPFDKFGIILEYGGPNKSSTLLSLAPKLDGLPPLHFLYVKVDG
KDFPAALVEDNHKDQDLKSTLDKVLLTLQKDLQERMNKMRIVDSLNFIPATNQLQGLQEK
RSKHFAADATKELLPDDQPHRLQNLNKKNTFDSHNVVLADEQLHIQQTLSNKPVVNSQCV
PTVEKSSSTSSVSANVLKDPQENQSTTDLPSCVKNDCIMPGRLSVPDVVIVVNTGNHGKT
MLVSRRSSYQQILALEKGGMQVVERDIDLPVDLILSAAVCLVWYETALFEANELTTSAET
SGIKENVENIATNILMSVSFSFTGCIMVFEGEADFLSAVMDSSDSLYTAAASLDMNLQLF
FSHTPRSTDEIILNCITNVTSCYKAPLPDIPESESLAESFLTSFPSINPVSAYMLLSSGG
SLVEFLSWPHERRIQAVGKYLLSPKIISLFNALCKFGELGESRSVMTECSSVDSDISSAF
LQSPRKRKQRSLQACAVPTNKLLFSDSLNQIPGDYAEHAEVFSPSKLRKFSDMDNTIPEL
PDVFTFDESLNMRSEGFSYQQKKHDVDAIPGNQVINDDFSNGLTPNNQAYNRRTGNMVDT
FDLPWQPEFGGTHPSKSTFHTSRPSCSRTHSNPVFSTAFEINDDPGEWNISGGTKQTWKG
LAHGGTVDDSYRYDMDNRYHEPRDEIMQHPASSLAFQKLDFGSHATSQGSCWEIDYLRQM
SAKRKARQERSRCSNSPGMSIPRMRDSNSKILNPPPKESFRYRGDRDTPSRDQSPSIGTQ
HYGKGKEGAKAQNRRARKDFNVQPTSHKKRIEPSIDPTWTPIDKRARQKLSFVTYGKEKQ
SKLVWRNQNSPGVGCGFRKRFREEGT |
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| NT seq |
5121 nt +upstreamnt +downstreamnt
atgaggacccgcttcctcgccaccgactacttcgcgccgtcctcctcctccgccgccggc
aaagcgctagccctagagttcttcagcttcccctctctccccgtccccgcccttcctccc
gatccccacttcctcccgttcacctccgccgacgaactcccagccgccacggtcgccgac
gatggtctcggccctctccccatcgcctccgcgctctccgatttcctcgccgcggttatc
ccgcaggccctgcctgtgccgactgtgcccgcggccgacgaggtattggacgacttcctg
tacgacagaggcggatacggcgaggatttcagctcatgggagtttggtgcattcagaatc
cctaaggggtatggcgtgatcaaccgcgagaaggatgaaaagggggagggctctagatca
gacggtctggagatctcctcagttatgaagaggtgggaacaattgaaggagcttagattt
gaggttgtagaggtggatctcctaatggctttgcaagaagacattgcatcctttggtgaa
gaggagtctggtggtggtgtcacgttgttgcttcgtgttccagatatgaaaatccatttg
gatttcattgatattgagaccgacataaaaataagatatcaatctgatcttccagagtca
gtgtatcaagtagaaaaggtccctgtaaaagacaatgatggcaatggccattcttctctg
agagaagactgctgcttggagattgcagcactagatcatggtgcagtaatacctcgattg
gaagtaagtaggaattcttgggagctcgacgattgtctgactgagactgacagatacggt
gtttttgataatgttgttagacacttggatgaagcacagattcagcattcagtgtttaaa
tcaaccgagttcttgagatcaactgacatggacatgctgacctttgtttgtgaagatgca
ccatgccatgacattcaagtagataaaccagcagaaatcaaagctgcagtagaaatggat
gttgtgaggatcaatggcaatattctgcttgagaaaaattcagcactctaccctctcaag
cctgatggcacctgttcagacttgccttgctccattcttttagaggaggtacagatcatt
gattttccttcagataatgtattcaaaatgcttgttcagtcagagacaaataagatgaat
atatctgatgaaatattcaaagatgattttgatccagcaagacgtttgtatgaatcaatg
gttagctgcgagttagcactggttgatgatacatttaggtcattgcctacacctatttta
aatgatgatatagcagttaggtctagggtccctcccattcaagaaatactatgctcccta
aaaccacaccctctatcagcatctgatggaatttatttggattggcatctcttactggaa
ggaccatgcaaccgggagatttgttgttcttatgcaagcatggttgaggaggcaaaaact
tgccatttaagttctgagctgcaaaggagttgtcagagtacatcagtatttgttagcgat
tttctggaggattttcagagaagtccaaagcttcaagatgaggataaacatagcgatatt
tatgttcctgccccactgtctcatgatccacaaaaattggaagcaactcaaaaatgcgaa
caagaaggtggtactagaaaccatagttccatgaaaagaccgagtccagaaaagtcatct
tccttccctgagttaatatcacattctggtgacctaaatttttacttaaacgtcagaagt
gccactaagagtggaaccaataatgagaatacttctactttagatgtcccgcattcagaa
gagcaagcattatctctttcaaccagggctaaggttgacaaactcatagaaattcatcct
gtcagcccctcaaatcttattcaaggccttatagaacaaatccatgcaagctatacatct
gctctgcaagaaagcacatattggaggcattctttctcagatgagcaaggtttaggaatc
tcaaagcagaaacttcttgaactgataacgggagaaggttcagaaggctcgtacaatcac
tgcgaacacaaagataagatggaactcattgtactgtatgcattaaagcaggttgcatat
tacttatgtttctttggtctgcatgcggcccatttgtacattagcaacctgactagaagc
ttggaaaacactcctgagaggttaaaacatattctatggtccatttctgaagcacagagg
aaatctgagaggcaactgtttgaatctcatccgtcattgtcatgcattgagactatcctg
agatctaataaacaaatcgaccaaaagatccttatagttgctgatagagctttctggctg
ccactgggtcaaaagctagcatccatgaggatgacatttgttgagtttggacaaaaccct
gcaacaacttttgtggatctggtgaacaagacaaactctacagcttgggtgctggaagaa
ttactgaaatcagattgcattctgctagataacaagaacattccagcttcattccctttt
gacaagtttggcatcatactggaatatggaggcccgaataaatcatctaccttgttatct
ctcgctcctaaattagatggtttgccacctctgcatttcctctatgtcaaagttgatggc
aaggactttccagctgctctagtcgaggacaaccataaagaccaggatttgaaatctaca
ttggataaagttttgcttacacttcagaaggatttgcaggagaggatgaataaaatgcgt
attgttgattcgttaaacttcataccagcaacaaatcaactgcaaggtcttcaagaaaaa
cggagcaaacattttgctgctgatgctacaaaagaactgcttccagatgatcaaccacac
agattacaaaatcttaacaagaagaatacttttgattcacataacgttgtgcttgctgat
gaacagctacatatacagcaaacactgagtaataaacctgttgtcaattcacaatgtgta
cccacagttgagaagagtagctctacttcttctgtatctgccaatgtgctgaaagaccct
caagagaatcagtccactactgacttaccttcctgtgtgaaaaatgactgcatcatgcca
ggaagactgtccgtcccagatgtagtgatagttgtaaatactggaaatcatggaaagacg
atgcttgtttcgcgaagatcatcttatcagcagatactagctctggagaaaggaggaatg
caggtcgtggagcgagatattgatctgcctgtggatctgatactcagtgctgctgtctgc
ctagtatggtatgagactgcgctctttgaggccaatgaactaacaacatcagcagagaca
tctggtataaaagaaaatgtagagaatattgcgaccaacattctgatgtcagttagtttc
tctttcactggctgcatcatggtctttgagggagaagctgacttcctttctgctgtaatg
gactcatctgattcattgtatactgcagctgctagtttggacatgaacttgcagctgttc
ttctcacacacacccaggtcaacagatgaaataattctcaattgcattacaaatgtgact
agctgttataaagctcctcttccagatatacctgaatcagaaagcctggctgaatcattt
ctcacaagtttcccttccatcaatcccgtgtctgcatatatgttactttcttctggaggc
agccttgtggagttcctcagttggccacatgagcgccgtattcaagcagttggaaagtat
cttttgtctccaaagatcatttccctatttaatgctttgtgcaaatttggtgagttaggt
gaatcaaggtctgtaatgactgaatgctcttcagtcgattcagatatcagtagtgcattc
ctgcagtctccgaggaaaaggaaacagcgttcattgcaggcttgtgcagtaccaactaat
aagctcctcttttctgattctctaaaccaaatacctggtgactatgcagaacatgctgag
gtattctcaccttctaagttgaggaagttctctgacatggataatacaattcccgagctc
ccagatgtctttacattcgacgaaagtttgaatatgagaagtgagggattctcttatcaa
caaaagaagcatgatgtggatgcaatacctggtaatcaagtcattaatgatgatttcagc
aatggattgacaccaaataatcaagcatataacagaaggactggcaatatggtggacaca
ttcgacttaccctggcaacctgaatttggtggtacgcatccaagcaaaagcacttttcac
acaagcagaccatcttgcagcagaactcatagcaatccagtattttcaactgcatttgag
atcaacgatgatcctggtgagtggaacatttcaggaggtacaaaacaaacatggaagggg
cttgcacatggaggtactgtagacgactcttacagatatgatatggacaacagatatcat
gaaccaagagatgaaattatgcaacatccagcaagttcgcttgcttttcagaaactagat
tttggtagccatgcaacttcacaggggtcatgctgggaaattgattatctaaggcaaatg
agtgcaaagagaaaagcacgtcaggagagatctagatgtagtaattcaccaggtatgtcg
atcccaagaatgagagatagcaactcaaagattctaaatcctccacctaaagaatccttc
agataccgaggagatagagacactccttcgagggaccagagcccttcaattgggactcag
cattatgggaaaggcaaggaaggagctaaagcacagaatcgcagagcaaggaaagatttc
aatgtacaaccaacaagtcacaaaaagaggatagaaccgtccattgatccaacatggact
cctattgacaagagagcaagacagaaactttcatttgttacatatgggaaggaaaaacag
agcaagctggtctggcgaaaccagaacagccctggtgttgggtgtggcttccggaaaaga
ttccgagaggaaggtacgtag |
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