Oryza sativa japonica (Japanese rice) (RefSeq): 4330186
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Entry
4330186 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 4b
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4330186
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4330186
03036 Chromosome and associated proteins [BR:
osa03036
]
4330186
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4330186
Coactivators
SAGA/TFTC/STAGA complex
4330186
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
4330186
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
Motif
Other DBs
NCBI-GeneID:
4330186
NCBI-ProteinID:
XP_015626016
UniProt:
Q6H7I0
A0A0P0VMB8
LinkDB
All DBs
Position
2:complement(26396519..26403266)
Genome browser
AA seq
728 aa
AA seq
DB search
MSTQLTEHDHQPEQEPPHSENHLKQAEPNSFQFAEKETGYAGLQNFTGPKVDVGQTSGEQ
QHVKQMVGQQAPPGAQDARKRGYQPSIPFNMLIPILQAHLDRDKDMQLQTVWAKLRRNEV
HKDDFLRVIRNIVGDQMLKQAAHKVFAQMQAQAQRSGQANANQQANANQYSLQSQVSSSG
SAQLHDQQVHVSTTPNQGQKNQALSSSQTFVQSGTQVQSSMTAHDNSIQRPDAKGMHVTP
NRPPVMNSAISAQTMNKQQQPTQVQQASQQIYGTTNRPDQPYTRPIGGSTPLSSLSSESE
IRPSSHPAKMEILPSHPMTQQNAAAQQMQQNKDVKTNASNPRSNAKQDSGTGKGRAVGTG
GSSTKSQGKQGPPNFSTPPAAKSNKKTAGQKKSLETSGSTPPPPSKKQKTSGTFQEQSFD
QLNDVTAVSGVNLREEEEQLLSAPKEESWASEEARKIAQEEDGKLFLQKGPLLKKLAAIV
PKCNLKSIGGDVEHCLSMCVEERLRRFISTLIRVSKQRIDTEKSGHQLVITSDVGRQILR
MNQKAKEEWDKKQAEETDKNKKQNEVDGGGTVELDKEKEETRSKNAKPNKEEDDKMRTTA
ANVAARQAVGGSDMLSKWQLMAEQARQKREGLDLAASSQRGTASRSHMAGKGPTDHHEAS
KRTHSAAFGTGGMNRQGRGPFAASHPKGPQRTISMKDVICVLEREPQMTKSRLIYRLYER
LPGDSTRD
NT seq
2187 nt
NT seq
+upstream
nt +downstream
nt
atgtctacccaattaacggaacacgatcaccagccagaacaagaaccaccacattctgaa
aaccatctgaaacaggcagagccaaacagcttccagttcgctgaaaaggaaacaggctat
gctggtctacagaatttcacaggccccaaggtggatgtgggtcagacttcaggagagcag
cagcatgtaaaacagatggtcggtcagcaagcaccacctggtgcacaggacgcaaggaag
cggggataccaaccgtctataccatttaatatgttgattccaatcctacaggctcatctt
gacagagacaaggatatgcagcttcaaactgtgtgggcaaaacttaggcgtaatgaagtt
cataaagatgatttcttgagagttatcaggaacatcgttggagatcaaatgctaaagcaa
gcagcccataaagtttttgcacagatgcaagcccaggcacagagaagtggccaggcaaat
gcaaatcagcaggctaatgcaaatcagtattctttacaatcccaagtatcttccagcggt
tcagctcaattacatgatcagcaagttcacgtgtccaccacacctaatcagggccaaaaa
aaccaagcattgtcttcatcccaaacctttgtgcaatctggcactcaggtgcagagcagt
atgactgctcatgataattccatccaacggccagatgcaaagggaatgcatgttacgccg
aaccgacctcctgttatgaactcagcaatttctgcacaaacaatgaacaaacagcagcaa
cccacacaagtccagcaagcctcacagcaaatatatggaacaactaatcgccctgaccag
ccatacactaggccaatcggtggttcaacacctcttagctcactgagttcagaatcagaa
ataaggccttcctctcatcctgcaaaaatggagattcttccttctcatccaatgacacaa
caaaatgcagctgcgcagcaaatgcaacagaacaaggatgtgaagactaatgcttctaat
ccaaggagtaatgcaaagcaagattcggggacaggtaagggtcgtgcagttggcactgga
ggttcttcaacgaaatcgcaagggaagcagggcccccctaacttttccacacctcccgct
gcaaagagtaacaagaaaactgctgggcagaagaagtcattggaaacatcaggctctaca
ccaccccctcctagcaaaaagcagaagacttctggaaccttccaagaacaaagcttcgat
caactaaatgatgtcacggctgttagtggtgttaatcttagggaagaagaagaacagcta
ctctctgccccaaaggaagagagctgggcctcagaagaagcaaggaaaattgcacaggaa
gaagatggcaagctttttctgcagaaaggcccacttctgaagaaactagcagcaatcgtt
cctaaatgcaatttgaagagcattggtggtgatgttgagcattgtttatcaatgtgcgtg
gaggagcgattgcgaagatttatcagtactctcataagagtttcaaagcagagaattgac
acagaaaagtctggccatcaactagttataacatcagatgttggccggcaaattttgcgg
atgaaccagaaagctaaggaagaatgggataaaaaacaagcagaggaaacagacaagaac
aagaaacaaaatgaggttgacggcggtggcactgtggaattagacaaggaaaaggaggaa
actcgttcaaagaatgcaaagcccaacaaagaagaagatgacaagatgagaacaacagct
gcaaatgttgccgcccgacaggctgttggaggaagtgatatgctgtccaaatggcaactg
atggctgaacaagctagacagaaacgcgaaggccttgatctggctgcttcttcacagcgc
gggacagcttccaggtcgcatatggctgggaaaggtcccacagatcaccacgaagcttcg
aagaggacccattctgcagcgtttggaactggaggcatgaacaggcaaggcaggggtcca
tttgcagcgtctcatccaaaaggaccacaaagaactatttctatgaaggatgtaatatgt
gtcctcgagagggaacctcagatgacaaaatcgcggctgatatatcggctctatgagcgg
ttgcctggagattccaccagagattag
Oryza sativa japonica (Japanese rice) (RefSeq): 4333214
Help
Entry
4333214 CDS
T01015
Name
(RefSeq) transcription initiation factor TFIID subunit 4b isoform X1
KO
K03129
transcription initiation factor TFIID subunit 4
Organism
osa
Oryza sativa japonica (Japanese rice) (RefSeq)
Pathway
osa03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
4333214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4333214
03036 Chromosome and associated proteins [BR:
osa03036
]
4333214
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
4333214
Coactivators
SAGA/TFTC/STAGA complex
4333214
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
4333214
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TAF4
RST
DUF4513
Motif
Other DBs
NCBI-GeneID:
4333214
NCBI-ProteinID:
XP_015631228
UniProt:
Q10IZ0
A0A8J8XZG1
LinkDB
All DBs
Position
3:complement(18638515..18647660)
Genome browser
AA seq
819 aa
AA seq
DB search
MDPLIKLLDDDVDETMHSGADVEAFTAALNREVEGSGGASTSAAASSSQPLDHGAGLVPQ
ESNSMFTHNHEQWQGSVKNEIGNQENQQQEQKHLHHSNEQPSRPELVSGGADNKQDQPKV
KQEPGNSSQQSNSGQKQPLQQMRSQQTPSTNQTNSAPTVGKPPVVTFHMLIPILRRHLDK
DKDMQVQSIFTKLRKNEVSKEHFLKVVRTIVGDKLLKQAAAQYQAQAAHGQRNPQTNPSN
YSLLSQVSNQQNVPSGSTSGVEHKSYPSAHSIPANQASDSPRPPFFRPSLSGQMQSNMGY
PSSESNLQKVNESSNMSDVKGGHMLSHPHNIQSAPGQATQHPQTSLPVLGSNNIHARPLP
RPVGGPIVPLRPQMADSSQRGQLVQGAVTSVTGSMAARPTLQTNISPWQQVNKEQKTKSF
PPTEHTNKGVGVPENQPSTSGTSKSFNTTNSSQPHRSHGTQAEPNMQIQPATQTPPPAAA
SKTPQKKASAGQKKPLDALGSSPPPSSKKQKTSGGYHDQSIDQLNDVTAVSGVNLREEEE
QLFSAPKEESRVSEAARMVVQLEEEKLILQKGPLKKKLAEIMRKCNLKSIGSDVERCLSM
CVEERLRGFISNTIRLSKQRVDLEKSRHRIYPLSSDVRSHILRVNREAREQWDKKLAEDA
ERIRKQSDGDDNAVVDSEKDKNESRSTSKHAKTYKAEDDKTRTTAANAAARVAAGGDDML
SRWQFMAEKKKSKCDGDGSSGSMPGNMLPRTSSPKPGKGSREQQEIEKTGGVRRSSHVKV
TRSITVKDVIAALEREPQMLKSSLLFQLYGRSPAESSAK
NT seq
2460 nt
NT seq
+upstream
nt +downstream
nt
atggatcccctcataaagctccttgacgacgacgtggacgagaccatgcactcgggcgcc
gacgtcgaggccttcacggcggcgctcaaccgcgaggtggagggcagcggcggcgcgagc
accagcgccgcggcctcctcctcccagccgctggatcacggcgccggtcttgtgcctcag
gagagcaattcaatgttcacccacaatcatgaacagtggcagggttcagtaaagaatgaa
attggaaaccaggagaaccaacaacaggaacagaaacatttgcatcattcaaatgagcag
ccatctaggcctgaactggtatctgggggtgctgataataaacaagaccagccaaaggtt
aagcaagagccaggaaacagttctcaacaaagtaattctggtcagaagcagcctttgcaa
cagatgaggagtcaacaaacaccaagcacaaatcaaactaatagtgctcctacggtgggg
aaacctcctgttgttacatttcatatgttaataccaattttgagacggcaccttgacaaa
gacaaggatatgcaagttcagtccatttttacaaagttgcggaaaaatgaagttagcaag
gaacactttctcaaagttgtaaggactattgttggcgataagttgctcaaacaagctgct
gcacaatatcaagctcaggctgctcatgggcaacggaatccacagacaaatccaagcaac
tattctttgttaagtcaagtttccaatcagcagaatgttcccagtggttctacgtcagga
gttgagcacaaatcatatccgtcagctcattccattcctgcaaaccaagctagtgacagc
ccaagaccaccttttttccgaccttctttgtcaggccaaatgcaaagtaacatgggctat
ccatcttcagaaagcaatttgcaaaaggttaatgaatctagtaacatgtcagatgtgaaa
ggggggcatatgctcagccatccacacaatatacaatcagccccagggcaagcaacacag
catccacaaacatctttacctgtgcttgggtcaaataatattcatgctcgtccattgcca
cgaccagttggaggtccaattgtaccacttagaccacaaatggcagattccagtcaaaga
ggacaattagtccagggagctgttacctcagtgactgggagcatggcagcacgaccaacg
ttgcaaactaatatatctccatggcaacaagtaaacaaagagcagaaaactaaatctttc
cctccaacagaacacacaaataagggtgttggtgttcctgaaaaccaaccatcaacatca
ggtacttctaaatctttcaacacaacaaactcaagtcagcctcatcgatctcatggcact
caagcagaaccaaacatgcagatccaacctgctacacaaacacctccccctgcagcagct
tctaaaacacctcaaaagaaggcatctgctggacagaagaaacctttggacgctttaggc
tcatcccctccaccatctagcaaaaagcagaagacatccggaggttatcatgatcaaagt
attgaccagctgaatgatgttactgcagttagtggtgttaatctgagggaagaagaggag
caacttttctctgctccaaaggaggagagtcgagtttcagaagctgctcggatggtcgta
caacttgaagaagaaaaactcatcctacaaaagggtcctctgaaaaaaaaattagcagag
atcatgaggaaatgcaatttgaagagcataggcagtgacgtggagcgatgtctatcgatg
tgtgttgaagagcggttacgaggattcataagcaatacaataagactttcaaaacagagg
gttgatcttgaaaaatcaagacatcgaatttatcctttgtcttcagatgttcgtagtcac
attttgagggtgaacagagaagctagagaacagtgggacaaaaagctggccgaagatgct
gaaagaatcaggaaacagagtgatggagatgacaatgctgtggttgattcagagaaggac
aagaatgagagtcgtagcacatcaaagcatgctaagacctataaggcggaagatgataaa
acgagaacaacagctgcaaatgctgctgcacgagttgcagcaggcggagatgacatgctt
tcaaggtggcagttcatggctgaaaaaaagaagagcaaatgtgatggtgatggttcttct
ggttccatgccaggcaacatgttgcctcgtacgtcttcaccgaaacctggaaaaggttca
agagaacaacaggaaattgaaaagacaggtggtgttagaagatcatcacacgtaaaagtg
acccggagcattacggtgaaggatgtgatcgcagcacttgagagggaacctcagatgttg
aaatcctctttgctgttccagctatatgggagatcaccagcagaatcatctgcgaaatag
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integrated database retrieval system