Oryza sativa japonica (Japanese rice): 4330280
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Entry
4330280 CDS
T01015
Name
(RefSeq) zinc finger protein GAI-ASSOCIATED FACTOR 1
KO
K25870
zinc finger protein IDD3/4/5/6/7/8/9/10/11/12/13
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4330280
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
4330280
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
C2CH-4th_BIRD-IDD
C2H2-2nd_BIRD-IDD
C2CH-3rd_BIRD-IDD
zf-C2H2
zf-C2H2_6
zf-met
zf-C2H2_jaz
zf-C2H2_STOP2_C
zf-C2H2_4
Motif
Other DBs
NCBI-GeneID:
4330280
NCBI-ProteinID:
XP_015626115
UniProt:
B9F1L2
Q6EU15
LinkDB
All DBs
Position
2:join(27803388..27803613,27804948..27805347,27810426..27811647)
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AA seq
615 aa
AA seq
DB search
MASNSSAAAVAALFGIRDGDHEDQIKPLFAQQQQHHHHQPPMAPSNAAAAASAAGSAAGQ
AAVAAPPAKKKRTLPDPDAEVIALSPKTLLATNRFVCEVCNKGFQREQNLQLHRRGHNLP
WKLKQKNPLQAQRRRVYLCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKR
YAVQSDWKAHSKICGTREYRCDCGTLFSRRDSFITHRAFCDALAQESARLPPAAAGHLYG
SAGAANMALSLSQVGSHLASTLQDHGHHHHHHGASPDLLRFGGSGGGAMAARLEHLLSSS
SASAFRPLPPPQQQPPAPFLLGAAPQGFGDGGDGSGPHGFLQGKPFHGLMQLPDLQGNGT
GGPSPSGPGLYNLGYIANSANSSGTSSHGHASQGQMTNTDQFSEGGGGGGGGGGSETSAA
ALFGAGGNFSGGDHHQVSPAGMYANDQAMMLPQMSATALLQKAAQMGSSTSSANGAGASV
FGGGFAGSSAPSSIPHGRGTTMVDQGQMHLQSLMNSLAGGGNADHQGMFGSGSMIDPRLY
DMDQHEVKFSLQRGGGGGGDGDVTRDFLGVGGGGFMRGMSMARGEHHGGGGSDMHGTLEA
EMKSASSSFNGGRMQ
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atggcatccaactcatcagcggcagctgtggcggcgttgtttggaattagggatggcgac
catgaggaccagattaagccgctatttgcccagcagcagcaacaccaccaccaccagcca
cctatggcgccatccaacgccgcggcggcggcttctgcggcagggtcggcggccggtcaa
gcggccgtggcggcgccaccagcgaagaagaagagaaccttaccagacccggacgcggag
gtgatagcgctgtcgccgaagacgctgctggcgacgaaccggttcgtgtgcgaggtgtgc
aacaaggggttccagcgggagcagaacctgcagctgcaccggcgcgggcacaacctgccg
tggaagctgaagcagaagaacccgctgcaggcgcagcgccgccgggtgtacctgtgcccg
gagccgacgtgcgtccaccacgacccctcccgcgccctcggcgacctcaccggcatcaag
aagcacttctgccgcaagcacggcgagaagaagtggaagtgcgacaagtgctccaagcgc
tacgccgtccagtccgactggaaggcccactccaagatctgcggcacccgcgagtaccgc
tgcgactgcggcaccctcttctcccggagggacagcttcatcacccaccgcgccttctgc
gacgccctcgcccaggagagcgcgcggctgccacccgccgccgccggccacctctacggc
tccgccggcgccgccaacatggcgctcagcctctcccaggtcggctcccacctcgcctcc
accctccaggaccacggccaccaccaccaccatcacggcgcctccccggacctcctccgc
ttcggcggcagcggcggtggcgccatggctgcacgcctcgagcacctcctgtcgtcgtcc
agcgcctccgcgttccggcccctgccgccgccgcagcagcagcctccggcgccgttcctc
ctcggcgcggcgccgcaggggttcggcgacggcggcgacggcagtggtccgcacggattc
ttgcagggtaagccgttccatggcctcatgcagctccctgacctccaagggaatggcacc
ggcgggccgtcgccgtcgggtccgggtctctacaacctcggctacatcgccaacagcgcg
aacagctcgggtacttccagccatggccacgcgagccagggacagatgacgaacaccgac
cagttcagcgaaggagggggtggtggcggcggcggcggcggttcagagacatcggcggcg
gcgctgttcggcgccggtgggaacttctccggcggcgaccaccaccaggtttctcctgcc
gggatgtacgcgaatgatcaggccatgatgctgccgcagatgtcggcgaccgcgctgctc
cagaaggcggcgcagatgggctcgagcacgtcgagcgcgaacggcgccggcgcgtccgtg
ttcggcggcggcttcgccggctcgtcggcgccgtcgtccatcccgcacggccgcgggacg
accatggtcgaccaggggcagatgcacctccagagcctgatgaactcgctcgccggcggt
ggcaacgccgaccaccagggcatgtttgggagtggcagcatgattgacccgaggctgtac
gacatggaccagcacgaggtgaagttcagcctgcagcgcggcggcggcggcggcggcgac
ggcgacgtgacgcgtgacttcctcggcgtcggcggcggcggtttcatgagggggatgtcg
atggcgagaggggagcaccatggcggtggcggcagcgacatgcatggcaccttggaggcc
gagatgaagtcggcgtcgtcgtccttcaacggaggcaggatgcaatga
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