KEGG   Oryza sativa japonica (Japanese rice): 4330568
Entry
4330568           CDS       T01015                                 
Name
(RefSeq) enhancer of mRNA-decapping protein 4
  KO
K12616  enhancer of mRNA-decapping protein 4
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4330568
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330568
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4330568
  mRNA degradation factors
   5'-3' decay
    Decapping complex
     4330568
SSDB
Motif
Pfam: EDC4_C Ge1_WD40 WD40 WD40_CDC20-Fz WD40_WDHD1_1st WD40_Prp19 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd WDR55 Beta-prop_WDR75_1st Beta-prop_EML_2 Beta-prop_Vps41 Beta-prop_TEP1_C DUF445 DUF244
Other DBs
NCBI-GeneID: 4330568
NCBI-ProteinID: XP_015626168
UniProt: A0A0P0VP77 Q6Z5M6
LinkDB
Position
2:complement(join(30508116..30508424,30508507..30508632,30508856..30509014,30509154..30509324,30509635..30509754,30509826..30510185,30512061..30512947,30513051..30513624,30514640..30514768,30515537..30515755,30515833..30515989,30516235..30516284,30516830..30517588))
AA seq 1339 aa
MATPTGNPNPNPNPSTPFEVSMLFKPPSNAPAAAPIFPGGPAAGPPPPSAAYSYPPATPP
FHRAPFLHYPQDPMAAPHMPRPVISFPMPTPNPAAIPSAAAAAAAAAGPSQNHGARLMQL
LGSSGPAHLDSSASMPPPASEFAAAQPPQPIPAMPSAPPARMLSSTSSKMPRGRLLGGGD
RAVHDVDSRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNI
NTALRSLLRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWKIDEGPDEDSKPQITGKIEI
AIQIVGDAESYHPRICWHSHKQEILFVGIGNCVLRIDTTKVRRGRDVSAEEPIKCHLDKL
IDGVRLVGKHDDDVTDLSLSQWMTTRLASGSKDGTVKIWDDRKPVPLSILKPHDGQAVYS
VAFLTAPEHPDHINLVTAGPLNREVKIWASANEGGVLLPSDSETWNCTQTLELVSSLEPR
VEEAFFNQVTVLPQASIILLANAKKNAIYAVHVEYGTDPASTRLDYIADFTVAMPILSLT
GTHESQPGNDQVVQVYCVQTMAIQQYGLDLSLCSPPTSETTGLGRDPSISRVHETPLEVV
GAESSMPTSFTDSYSVGSPSKSSTVDQQSELDPKPSAPPLTYTEGDGSVHLPSASLASNM
DPSGSGSSLGNLEMDQPAFDYAMNRNVEPKILTRQDTPMPKDNFGKDDPRDGRNDVTMLP
NPHLMFKVGGNTTHLVTPSEIISGALSSAESNHVPKSDGVKIQDGTSSGHQMAEVEPKHT
NEHTFDQNLDLEVAQVVCENTKQAGSSEQTVKMISERSVTTDKYSVEESQTSCDRSISEH
TGAADESVTKKPVEVPEKSDYSSASVEQSSSYTKKEKIMHPQASGQSSPSTSAFNSTESS
HEPPSSAYPPINSFPEVTTQGMLQQLIAMHKDLQKQLGTIVVAPLAKEGKRIEASLGRTM
EKSIKANLDALWVRIQEENAKREKAERERMQQMITLITNSISKDLPATLEKSLKKEISSL
GPVIARAITPIIEKCSASAVADSIQKVVGDRVVNQLDKSVSAKLEATVARQIQMQFHTSV
KQTLQDALRASLEAFLVPAFEQSCKTMFEQVDSAFQKGMSEHTVAIQQQVEATHTPLAQT
LKDTISSASSITQNLTAELLDGHRKLLALLASGNAKAHSTNVLQPNNVPVTGPPEVEAPL
DPMKELGRLISERKFDEAFTMALQRSDVSIVSWLCSQVDLRALCSMVPVPLNQGVLLALL
QQLAVDIATDTPRKIQWMTDVAMAINPTDPVIAMHVKPIFEQVYNALLHLRSLPTTSPSD
STSIRLFMHVINSVLLSYK
NT seq 4020 nt   +upstreamnt  +downstreamnt
atggcgaccccgaccggaaaccctaatcctaaccccaaccctagcactcccttcgaggtc
agcatgctgttcaagccgccctccaacgcccccgcggccgcccccatcttccccggcggc
cccgccgcgggcccgccgccgccgtccgccgcgtactcctacccgcctgcgactcccccc
ttccaccgcgccccgttcctccactatccgcaggaccccatggcggcgccgcacatgccc
cgccccgtcatctccttcccgatgccgaccccgaacccggccgctatccccagcgccgcc
gccgccgccgccgcagccgcggggcccagccagaaccacggcgcgcgcctcatgcagctc
ctggggagctccgggccggcccacctcgattcctccgcctccatgcccccgccggcgtcg
gagttcgccgccgcgcagccgccgcagccgatccccgcgatgccgtcggcgccgccggcg
aggatgctgagcagcacgagcagcaagatgccgcgggggcgccttctcggcggcggggac
agagcggtgcacgacgttgactcgaggctgccgggggaggcgcagccgccgcagctggag
gtgacgccgatcaccaagtacacatcggatcccgggctcgtgttgggcaggcagatcgcc
gtgaacaggacgtacatcgtgtatgggcttaagctcgggaacatccgcgtgctaaacatc
aacaccgcgctccgttcgctccttcgtggccacacacagagggtgacagatatggctttc
tttgctgaggatgttcatcgtttagcaagtgcaagtgtagatggtcggatatatgtttgg
aagattgatgagggtcctgatgaggacagcaaaccacaaattacaggaaagattgaaatt
gccatccagattgttggcgatgctgaatcttaccatccaaggatctgttggcactctcat
aagcaggagattctgtttgttggcattggaaactgtgtcttaagaatagacacaactaaa
gtgcgacggggaagggacgtaagtgcagaggaacctatcaagtgtcatcttgacaagctc
attgatggtgtgcgcttagttggtaagcatgatgatgacgttacagatttgtccttatct
caatggatgactacccgactggcttcaggatcaaaagatggcacggtaaaaatttgggat
gatcgcaagccagtgcctctatcgattctgaagccacatgatggtcaagctgtttattct
gttgcttttctcacggcacctgagcatccagaccatataaacctcgttacagcaggtcct
ctaaaccgagaagttaaaatttgggcttctgccaatgaaggaggtgtgttgttgccaagt
gattccgagacttggaattgcacacagacattggaacttgtcagctcactggaacccagg
gtagaggaggcatttttcaaccaagttaccgtgctgcctcaagcaagtattattttactt
gcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggcacagatcctgct
tcaactcgcttggattatatagcagattttacagttgcaatgcctattttaagtctcact
ggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttattgtgttcaaaca
atggctatccagcagtatgggctggatttatcactctgttcacctcctacaagtgaaact
actggacttggaagggatccatctatttctcgtgttcacgagacacctctggaagtggta
ggagcagagtcatccatgccaactagcttcaccgattcttattccgtcggttctccaagt
aaatcatcaaccgttgatcaacagtctgaacttgatcctaaaccatcagctccaccactt
acatacacagaaggtgatggttctgttcatcttccatcagcctctcttgcatcaaacatg
gacccttctggatcaggatcgtcactaggtaaccttgaaatggaccaaccagcttttgat
tatgcgatgaacagaaatgtggagcctaaaattttgactaggcaagatacacccatgcct
aaggacaactttggaaaggatgatccaagagatggtcgcaatgatgttacaatgcttcca
aatcctcatttgatgtttaaggtaggagggaacactacacacttggtaactccatctgaa
atcatatctggcgctctatcttcagctgagagcaaccatgtccctaagtctgatggagtg
aaaatccaggacggcacaagtagtggtcatcagatggcagaagtagaaccaaaacatacc
aatgagcacacatttgatcaaaatttggaccttgaagtagcacaggttgtttgtgagaat
acaaagcaagctggttcatcggagcaaactgttaaaatgattagtgagcgctcggtaaca
actgataagtacagtgtggaagaatcacagacatcatgtgatcgatccatttctgagcat
actggtgctgctgacgaaagtgttacaaaaaaacctgttgaagtgcctgagaaaagtgat
tattcctctgcttctgtggagcaatcatcttcatataccaagaaggagaaaattatgcat
cctcaagcatctgggcagtcatctccttctacaagcgcattcaactcaactgagtcttca
catgaacctccgagtagtgcataccctcctatcaattcatttccagaagttactacgcaa
gggatgcttcaacagctcatagcaatgcataaggacttgcaaaagcagctgggtactatt
gttgttgcacctcttgcaaaggaaggcaaaagaattgaggcatcattagggcgcaccatg
gagaaatctatcaaggctaaccttgatgccttgtgggttcgtatccaggaggagaatgca
aaacgagaaaaggctgaaagagagcgaatgcagcaaatgattactcttatcactaattca
ataagcaaggaccttcctgctactttggagaagtcactgaagaaagaaatttcttcactt
ggacctgttattgcacgggcaataacacctattatcgagaagtgttcagcctctgcagtt
gctgattcaattcagaaagtggttggtgacagagtggtgaatcagctggacaagtctgtt
agtgcaaaacttgaagctactgttgctagacaaatccaaatgcagttccacacatctgta
aaacagacccttcaggatgctttacgtgctagcctggaagctttccttgttccagcgttt
gaacaatcttgcaagacaatgtttgagcaagtcgatagcgcattccagaaaggaatgtct
gaacacactgttgctattcagcagcaagttgaggcaacacataccccattggcgcaaact
ttaaaggataccatctcttctgcgtcttcgatcacccagaatcttacagcagagttgctt
gatggccatcgcaaactattggcgctgcttgcatcgggcaatgcaaaagcacatagtaca
aacgttttgcagcccaacaatgtccctgtgactggtccaccggaggttgaggctccatta
gatccaatgaaggagttgggcagactgatatctgaacgcaaatttgacgaggcatttaca
atggctcttcaaagaagtgacgtgtcgatagtgtcttggttgtgctctcaggttgatttg
cgcgcattgtgctcaatggtccccgtcccccttaaccagggggtcctcctagccctattg
cagcagctagcagttgacattgctactgatacgccgcggaagattcagtggatgacagat
gtcgctatggcgataaatccaaccgatccggtgatcgccatgcacgtgaagcctattttc
gagcaagtctacaatgcattgctccacctacgctcgctccccaccaccagcccatcagac
agcaccagcatccgcttattcatgcatgtaattaattctgttctgcttagctacaagtga

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