Oryza sativa japonica (Japanese rice): 4330573
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Entry
4330573 CDS
T01015
Name
(RefSeq) chromatin structure-remodeling complex protein BSH isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03082
ATP-dependent chromatin remodeling
osa03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
4330573
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
4330573
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
osa01009
]
4330573
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
osa03021
]
4330573
03036 Chromosome and associated proteins [BR:
osa03036
]
4330573
Protein phosphatases and associated proteins [BR:
osa01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
4330573
Transcription machinery [BR:
osa03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
4330573
SWI/SNF complex
4330573
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
4330573
PBAF complex
4330573
SWI/SNF complex
4330573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF5
Motif
Other DBs
NCBI-GeneID:
4330573
NCBI-ProteinID:
XP_015623160
LinkDB
All DBs
Position
2:join(30563788..30563840,30563937..30564025,30564123..30564217,30564321..30564392,30564476..30564523,30564645..30564728,30565313..30565351,30565483..30565568,30565687..30565749,30565962..30566057,30566175..30566184)
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AA seq
244 aa
AA seq
DB search
MKTVSLGAARPSSVKFRMPTRDNLVPIRVDVEVDGQRYRDAFTWNPCDPDSEIISFAKRT
AKDLKLPANFVPQMLHSIQGQLTEFRSYEGEEMQIREKIVPLKIDLRINNTVIRDQFLWD
IGNLDSDPEEFARTLCDDLNITDPEVGPAIAVSIREQLYEIASQSVSAMREAARVSKKGR
RAPEFASNSKAMNNSLDLFKYFGSKGSVVRKRKEWYLYEPVVDVITNEEVGVTDATEEIN
SRNA
NT seq
735 nt
NT seq
+upstream
nt +downstream
nt
atgaagacggtgagcctcggcgccgccaggccttcgtctgtcaagttccgcatgccgacg
agggataacctggtgccgatacgcgtcgacgtcgaggtggacggccagcgctacagggac
gccttcacctggaacccatgcgaccccgactcggagatcataagcttcgcgaagaggacg
gccaaggacctcaagctgccggccaacttcgtcccccagatgctccactccatccagggg
caactgaccgagttccgttcctacgagggagaggagatgcagatcagggagaagattgtg
cccctcaagattgacctccggataaacaatactgtaatcagagatcagttcttgtgggat
ataggcaacctggatagtgatcctgaggaatttgcaaggacgctatgtgacgatttgaac
attacagatcctgaagttgggcctgcaatagctgtctccatccgcgagcagctttatgag
attgctagtcaaagtgtttctgctatgagggaagcagctagagtttcaaagaaggggagg
cgagcaccagaatttgcttcaaatagtaaagccatgaacaattcactagatctattcaag
tattttggcagcaaagggagtgtcgttcggaaaaggaaggaatggtacttgtatgagcct
gttgtagatgtcataactaatgaggaagttggagtaactgatgcaacagaggagattaac
tccaggaatgcatga
DBGET
integrated database retrieval system
