KEGG   Oryza sativa japonica (Japanese rice): 4330659
Entry
4330659           CDS       T01015                                 
Name
(RefSeq) ATP-dependent RNA helicase DEAH13 isoform X1
  KO
K14780  ATP-dependent RNA helicase DHX37/DHR1 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:osa03009]
    4330659
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4330659
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  90S particles
   Helicases
    4330659
SSDB
Motif
Pfam: OB_NTP_bind Helicase_C DHX37_C HA2_C DEAD AAA_22 HA2_N ATPase nSTAND3 AAA_19 PhoH
Other DBs
NCBI-GeneID: 4330659
NCBI-ProteinID: XP_025878676
LinkDB
Position
2:join(31251513..31251835,31251919..31251991,31252062..31252130,31252216..31252265,31252337..31252397,31252484..31252849,31253010..31253222,31253294..31253524,31253970..31254083,31254171..31255373,31255475..31256920)
AA seq 1382 aa
MSLGFYGPFSFGPLGVTNKPGPNWIPSTLRLGPSPPPPPLPSLPPPRAAGSAAAAASAAH
RLLSAGASARSSELSLEGGRCPISPRGPAPPACPLADAADVGEHQLTGSSMEDSNTLILP
CKRKNKGQGKDKDGKKIKEDPKMSKSKLKKLQNLEEEKQKKLLQAQSIEILRKHKISDDA
YSLLHASGTIGQAETLKEKRRRAVHFSKAGLNVPEELSLLKKDGDQKASENSEAAEEDYL
DKIVDSAKNEDPQRKCNNHIDNVAMKPVECKLVIDVGLSDQEPKTEGSDGVPNISANQAI
QSCVPSCSGEEILQDKEPGQEERTVQECFNPPIVVPVSRPHEVEKTRRDLPIIMMEQEIM
EAIYENSVVILCGETGCGKTTQVPQFLYEAGFGTSNRSDRKGIIGITQPRRVAVLATARR
VSYELGLKLGKEVGFQVRHDKMVGSKCSIKFMTDGILLREVQSDFLLKRYSVIILDEAHE
RSLNTDILIGMLSRIIKIRKSLYIEQQEKIRCGLSINPEDKISQLKVVLMSATLQLKDFI
SNRRLFDVIPPAIKVPVRQFPVTVHFSKSTHDDYLGQAYKKVMSIHKKLPQGGILVFVTG
QREVDYLCKKLQRASKQQTDKKTEKVEGDENGSSQEVVEREISEAYDIDRDESEHQDDMF
SQYDEDESNAGPGVDSSDIEMEPEMDTDSEDDDSVYETTEEDGPVLAFLKGAEGSSGLKA
SFKAISRVSGEPESTDVPSNATILEESSHVPCTSKCTEPRSVSHGKLRVLPLYAMLPASQ
QLRVFQDIPDGERLVVVATNVAETSLTIPGIKYVVDTGKQKVKNYNHATGMASYEIQWIS
KASASQRSGRAGRTGPGHCYHLYSAAAYGKDELFPEFSEPEIKNIPVDGVVLMLKFMNIN
KVENFPFPTPPDKESLVEAERCLKVLEALDSKGEPTLMGKAMAQYPMSPRHSRLLLTIVK
ILNSQRCFSRPNFILGYAAAAASALSFTNPFLTQNEFSGESKQDNPDSEDKDRQERKRQK
KLKAMVREAHTKFSNPSSDALSISRALQLFELSENPVEFCRVNSLHLKTMEEMSKLRKQL
LRLIFHHSKFCEEFSWKFGVSEDVEEAWRHESDKKPMQLNEEELLGQGICAGWADRVAKR
IRAFPGPSKDDKKVRAVHYQSCAFNDTIYLHRSSSVARIAPEFVVYSELLHTKRSYMHGV
TSVKPGWILKYASSLCTFSAPLEDPKPYYEPQKDQVYCYVSPIFSRHNWQLPLHSLPIQD
GTNRLQVFACALLKGDVLPCLKVIQKFLALSPSVLLGPVSQRRVGDLLDRMKIGSKLIDS
RAALRDVWNFNPDFLYPEIKAWIQDKFHSHFGAIWEQMHKEVVLEGDELFPKRYKKVKGN
QF
NT seq 4149 nt   +upstreamnt  +downstreamnt
atgtcgttgggcttttatgggcctttctccttcggcccattaggcgtcacaaacaagccc
ggcccaaactggatcccctctactcttcgattaggtccatcgccgccgccgccgcctctc
ccatcgcttccacctccgagggctgcaggctcggcggcggcggcggcgtcggcggcgcac
cggcttctctctgccggagcatcagctcgctccagcgagttgtcccttgagggagggagg
tgtccaatttcaccacgcgggccagcaccgccggcttgccccctcgcggacgctgccgac
gtcggtgagcaccagcttacaggttcgagcatggaggacagcaacacgctgattctgccg
tgcaagaggaagaacaaaggacaagggaaagacaaggatggtaagaaaatcaaggaagac
ccgaagatgagcaagagtaagctgaaaaagctgcagaatttggaggaggaaaagcaaaag
aagttactgcaagctcaaagtattgagattttgcggaagcacaagatttcagatgatgcg
tattctctgctccatgcttctgggactatcggtcaagctgagaccttgaaagaaaaacgt
aggcgtgctgtgcacttctccaaggctggtttgaacgtccctgaagaactctcactatta
aagaaagacggcgatcagaaagcttctgaaaacagcgaggctgcagaggaagattacctg
gacaagattgtcgattcagcaaaaaacgaggatcctcaaagaaaatgtaacaatcacata
gataatgttgcaatgaaacctgtggaatgcaaactggttatagatgttggactgagcgat
caagaaccaaaaactgaaggtagtgatggtgttccgaatatttcagcaaatcaggcaatt
caatcatgtgttcctagttgttctggtgaagagatattacaggataaagagccaggacaa
gaagaacgtactgtacaagagtgtttcaatcctccaattgttgtacctgtgtcaaggcca
catgaggttgagaaaacaaggagggatcttccaataataatgatggagcaggaaataatg
gaagctatttatgaaaattctgtggtaattctatgtggagaaacaggctgtggtaaaact
actcaagttccacagttcttgtatgaagctggctttggcacaagtaaccggtctgacaga
aaaggaataattggtatcactcaaccacgacgtgttgccgtacttgccacagctaggagg
gtgtcctatgagctaggtcttaagctaggaaaggaggtcggttttcaagttaggcatgat
aaaatggtaggaagtaaatgctcaataaagtttatgacagacggcattttgcttcgagag
gtccagagtgactttctgctgaaacgctattctgtaatcatcttggatgaggcgcacgaa
aggagcttgaacacagatatacttatcgggatgctatctagaattataaagattcgcaag
tcattgtacatagagcaacaggaaaaaatacgttgtggtctgagcattaatccagaagat
aagattagtcagttgaaagtggtgctaatgagtgctaccttgcaattgaaggacttcatt
tcaaacagaagattgtttgatgtgatcccaccagctataaaggtacctgtacgacaattc
ccagtaacagttcacttctcaaagagtacacatgacgattatttggggcaagcttataaa
aaggttatgtccatccacaagaaacttccacaaggtggaatccttgtctttgttactgga
caacgagaagtcgattacttatgtaagaaactgcaaagagcatcaaagcagcaaactgac
aagaagactgaaaaagttgagggtgatgagaatggctcgagccaagaagtggtcgagagg
gaaatcagtgaagcatatgatattgatagagatgagtctgagcaccaagatgacatgttt
tcccaatatgatgaggatgagagtaatgctggcccaggtgtagattcttcagacattgaa
atggaacctgagatggataccgacagtgaggatgatgattctgtttatgaaaccacagaa
gaggatggaccagtattagcatttttgaaaggtgctgagggttcatctggattgaaggca
tcatttaaggctatatcaagagtgtcaggagaaccggaaagcactgatgtaccaagcaat
gctacaattttagaagagtcaagtcatgttccttgtaccagtaaatgcacagaacctagg
tctgtttcgcatggtaaacttcgtgtgttaccactttatgctatgttaccagcttcacag
cagcttcgagtgtttcaggatattcctgacggtgaaagattagttgttgttgcaacaaat
gttgcagaaacctctttaacaattcctggcataaagtatgtagttgatactgggaaacaa
aaagttaagaactacaaccatgctactgggatggcaagttatgaaatccagtggataagc
aaggcatctgcatcccagcgttctgggagagctggaagaacggggcctgggcactgttac
catctctactcggctgcagcatatggtaaagatgaattattccctgagttctctgagcct
gagatcaagaatattccagtcgatggtgttgtgcttatgctcaagtttatgaatattaat
aaggttgaaaactttcctttccctacacctcctgacaaggaaagtttggttgaagctgag
cgttgcttaaaagtattggaagcgcttgatagcaagggtgaacctacattgatggggaag
gctatggcacaataccccatgagcccccgacattctcgacttcttctgacaatagttaaa
attttgaacagtcagcggtgcttttccagacctaacttcatattgggatatgcagcagct
gctgcatcagcattgagctttacgaatccttttctcacgcagaatgaatttagtggtgaa
tcaaaacaagataaccctgattcagaagataaggataggcaggaaaggaagagacagaag
aagctcaaggcgatggttagagaggcccacacaaaattttccaatcctagcagtgatgct
ttatccatctctcgtgccttgcagttgtttgagttgtcagaaaacccagtggaattttgc
agagtcaactcacttcatctcaaaacaatggaagagatgtcaaaattgaggaagcaactt
cttcgattaatatttcaccatagcaaattttgtgaagaattttcttggaaatttggggtt
tctgaagatgtagaagaggcctggaggcatgagtctgataaaaaaccaatgcaattaaat
gaagaggagcttctaggacaaggaatatgtgctgggtgggctgatagggttgcaaagagg
attcgtgcctttcctggaccatcaaaagatgataaaaaggttcgggctgttcattatcaa
tcttgtgctttcaatgatacaatatatctacaccgatcatcttctgttgcacgaattgca
ccagaatttgtagtttactcggaactacttcatacaaagagatcatatatgcatggtgta
accagtgtaaagccaggatggattttgaaatatgctagttctctttgtacattctctgca
ccattggaagatccaaaaccttattacgaacctcaaaaggaccaagtctactgttatgtt
agccccatcttttctcggcataattggcagcttccattgcatagtttacctatacaggat
ggcaccaatcggttgcaggtatttgcatgtgctttgcttaaaggagatgtcttgccatgt
cttaaggttattcagaagttcctggcactgtcaccatctgttctcctagggcctgttagc
caaagaagagttggtgatcttcttgacaggatgaagattggttcaaagttaatagatagc
cgggcagcattaagagatgtgtggaattttaatccagattttctttatcctgagataaaa
gcatggattcaagataaatttcatagccattttggagcaatatgggaacaaatgcataaa
gaagtagttcttgagggcgatgaacttttcccaaagaggtacaagaaagttaaaggtaat
caattctag

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