KEGG   Oryza sativa japonica (Japanese rice): 4330670
Entry
4330670           CDS       T01015                                 
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH15 chloroplastic precursor
  KO
K26077  ATP-dependent RNA helicase ISE2 [EC:5.6.2.6]
Organism
osa  Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:osa00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4330670
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     4330670
Spliceosome [BR:osa03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   RNA helicase-like proteins
    4330670
SSDB
Motif
Pfam: SH3_ISE2 DSHCT DEAD ResIII DEXQc_Suv3 Helicase_C IstB_IS21 AAA_22 Ski2_cyano_M AAA_16
Other DBs
NCBI-GeneID: 4330670
NCBI-ProteinID: NP_001403807
LinkDB
Position
2:join(31367948..31368469,31369397..31369572,31370036..31370149,31370503..31370611,31370695..31370781,31371182..31371300,31371482..31371659,31371794..31372393,31372480..31372758,31373348..31373554,31373820..31374164,31374581..31374817,31375390..31375610,31376513..31376612,31376699..31376845,31376944..31377042)
AA seq 1179 aa
MHCLAPHFLLFLPLSSASRHALPHTPPAPLLLPSHPAQAQAQARAGPLRLPSARSPSRAA
APVSDDDEDEEDDEEIDIRDDADVDEEYDDDDDEELDEESGGEEEEEEEGDDGVEELEEE
EGGREGTAARRRRSEEYKSQRVGKLVAEVREFGEDIIDYNELAGIYDFPIDKFQRLAIQA
FLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALSNQKFRDFRNTFGDHN
VGLLTGDSAINKDAQILIMTTEILRNMLYQSVGMAASEGRLFQVDVIVLDEVHYLSDISR
GTVWEETVIYCPKEVQLICLSATVANPDELAGWIGQIHGKTELVTSHKRPVPLTWHFSKK
FALVPLLDGKGKKMNRKLRMSHFQNLSSPKSEFYYVKGKRKLRTTKNEQGNRSPLDISKQ
VQLSKHELTNMRRSQVPLIRDTLSQLWENDMLPAIWFIFSRRGCDAAVEYLEDCRLLHDC
EASEVELELKRFRMQYPDAIRESAVKGLLRGVAAHHAGCLPLWKSFIEELFQRGLVKVVF
ATETLAAGINMPARTSVISSLSKRIDAGRQLLTPNELFQMAGRAGRRGIDTVGHSVLVQT
TYEGPEECCDVIFAGLEPLVSQFTASYGMVLNLLAGSKVTHNQKESDDIKVKRSGRTLEE
ARKLVEQSFGNYVGSNVMVAAKEELERIQSEIQYLSSEITDESIDRKCREELSEEDYAEI
SLLQKKLKEEKQMRNELKKRMELERMVAWKTRLEEFESGHLPFMCLQYKDKDSVQHTIPA
VFIGSLSSFADQKIVSLVENDSPVAGKQKVDNEGQQYYPSYYVALSSDNSWYLFTEKWIK
AVYKTGLPAVPSAEGGPLPRETLKQLLLREDMMWDKIAKSEYGSLLCMDGSLDTWSWSLN
VPVLNSLSEDDEVERFSQEHQDAVECHKQQRKKVSQLKKTIRSTKGFKEFQKIIDMRNFT
KEKIERLEARSRRLTRRIRQIEPTGWKEFLQISKVIQEARALDINTQVIYPLGETAAAIR
GENELWLAMVLRNKVLLDLKPSQLAAICGSLVSEGIKLRPWKNSSYVYEPSSVVTGVINY
LEEQRNSLVDLQEKHSVKIPCEIDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARLLRR
TIDLLAQIPKLPDIDPVLQKNAQIACNIMDRVPISELAG
NT seq 3540 nt   +upstreamnt  +downstreamnt
atgcactgcctcgccccccacttcctcctcttcctcccactctcctccgcctcccgccac
gcgctcccccacaccccacccgctcctctcctcctcccctcccacccagcccaagcccaa
gcccaagcccgcgccggcccgctccgcctcccatccgcgcgctccccttcccgcgccgct
gcccccgtctccgacgacgacgaggacgaggaggatgacgaagagatagacatccgcgac
gacgcggacgtggacgaggagtacgacgacgacgacgacgaggagctggacgaggagagc
ggcggtgaggaggaggaggaggaggaaggggatgatggggtggaggagttggaggaggag
gagggtgggcgggaggggaccgctgcgcggaggcggcggtcggaggagtacaagtcgcag
cgggtggggaagctggtcgccgaggtgcgggagttcggggaggatatcatcgactacaac
gagctcgcggggatctacgacttccccattgacaagtttcagcgcttggctatacaagca
tttttgagaggctcatctgtcgtagtttctgcacctacaagtagtgggaagacactaatt
gcagaagctgcagctgttgcaacagtcgctagaggaagacgcctcttctacacaacaccg
ttaaaggccttatctaatcagaagttccgtgatttccggaatacgtttggtgatcataat
gttggtcttcttacaggagattctgctattaacaaagatgctcagatcctgataatgaca
acagagattctgcgtaacatgctgtatcaaagtgtcggtatggcagcatcagaaggtaga
ttatttcaagttgatgttattgttttggacgaagtccattacttaagtgacatttcacgt
ggcactgtttgggaagaaactgtgatatattgtccaaaggaagtccagcttatatgctta
tcagccactgttgcaaatcctgatgaattagctggctggattggtcagatccacggtaaa
acagagttggtgacatcacacaaacgaccagttccacttacttggcacttctcaaagaag
tttgcacttgtaccacttcttgatgggaaaggaaagaaaatgaataggaaattgcgaatg
tctcacttccagaacctatcttctccaaaaagtgaattctattatgtgaaaggaaagagg
aagcttagaacaactaaaaatgaacaaggtaacagaagccccttggacatctcaaaacag
gttcagttgtcaaagcatgagctcaccaatatgcgccggtctcaagttccattaatacgt
gatactttatcacaactttgggaaaatgacatgcttccagctatttggtttatttttagt
agaagagggtgtgatgcagctgttgaatatcttgaagattgtagacttctgcatgattgc
gaggctagtgaagttgagctggaacttaagaggttcaggatgcaataccctgatgctatc
cgggaaagtgctgtgaaaggactcttacgaggagttgctgcccatcatgctggttgcttg
ccactgtggaaatctttcattgaagaattatttcagcgtggccttgttaaagtagtcttt
gcaacagaaacccttgcagcagggattaacatgcctgctagaacatctgtgatttcttct
ctcagcaaaagaattgacgctgggcgccagctcttaaccccaaatgaattattccagatg
gcaggtcgtgctggacgaagagggattgatacagttgggcattctgttcttgttcagact
acttatgaagggcctgaagaatgttgcgatgttatctttgctggacttgagccacttgtt
tcacaatttactgcatcatatgggatggttttgaatctccttgctggctcaaaagttact
cataatcagaaagaatcggatgatattaaggttaagcgttctggaagaactttagaagaa
gctcgaaagttagttgagcaaagctttggtaactatgttgggagcaatgtaatggttgct
gctaaagaagagcttgaaagaatacagagtgaaatacaatatctctcttcagaaattaca
gatgaatccattgaccgaaagtgtagggaagaattatctgaggaagactatgctgagatt
tcccttcttcaaaagaaattgaaggaagagaagcagatgagaaatgaactgaaaaaaagg
atggaactagagagaatggtggcatggaaaactcggttggaagaatttgaaagtggtcac
cttcctttcatgtgcttgcagtacaaagacaaagattcagttcagcatactattcctgct
gttttcattggaagcctcagttcatttgcggatcaaaagattgtgagcttggtggaaaat
gattctcctgttgctggcaagcagaaagttgacaatgaaggacagcaatattacccatct
tattatgtagccttgagttcagacaactcatggtatctattcaccgaaaaatggattaaa
gctgtttacaagacaggtctacctgctgttccttcagcagagggaggccctctccctaga
gaaaccctgaagcagctccttttgcgtgaagatatgatgtgggataaaattgcaaaatca
gaatatggttctttgttatgcatggatggatctctggacacatggtcgtggagtctcaat
gttcccgtgcttaatagcctttcagaagatgatgaggtagaacgattctcccaggaacat
caagatgctgtagaatgtcataagcaacagagaaagaaagtttcacaattgaagaaaaca
atcaggagtactaagggtttcaaagaatttcaaaagatcatcgacatgagaaactttaca
aaagaaaagatcgagcgtttggaagctagatctcgtcgtttgactcggcggataagacaa
attgaaccaactggttggaaggaatttttgcagattagcaaagtcatacaagaggctaga
gcattagatatcaatactcaggtaatctatccgttgggtgagacggcagcagccatacga
ggggaaaacgagctctggcttgccatggttcttaggaacaaggtccttttggatctgaag
ccttctcaacttgcagcaatatgtggaagtttagtgtcagaagggatcaaacttcgtccc
tggaaaaacagcagttatgtatatgaaccatcttctgttgttactggtgttataaactac
ttagaagagcagagaaactcactcgtcgatctccaagagaagcacagtgtaaagataccc
tgcgaaatagatgcccagtttgctgggatggttgaagcctgggcatcagggttgacctgg
agggagataatgatggactcggcaatggatgatggagatttagcccgtctgctcagacgc
acgattgatttactagcccagattccaaaattgccagatatagatccggttctccaaaag
aacgcacaaattgcttgcaacatcatggaccgggtaccgataagtgagcttgctggctga

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