KEGG   Oryza sativa japonica (Japanese rice): 4330687
Entry
4330687           CDS       T01015                                 
Name
(RefSeq) nuclear-pore anchor isoform X1
  KO
K09291  nucleoprotein TPR
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    4330687
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330687
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     4330687
SSDB
Motif
Pfam: TPR_MLP1_2 FAZ1_C
Other DBs
NCBI-GeneID: 4330687
NCBI-ProteinID: XP_015625576
LinkDB
Position
2:complement(join(31504568..31504618,31504722..31505971,31506325..31506502,31506615..31506677,31508257..31508364,31508432..31508499,31508588..31508675,31508764..31508817,31508894..31509040,31510018..31510089,31510737..31510886,31510977..31511054,31511422..31511535,31512435..31512488,31512585..31512737,31514097..31514189,31514862..31514978,31515644..31515746,31515852..31516036,31516108..31516182,31517111..31517194,31517324..31517368,31518207..31518248,31518328..31518507,31518769..31518822,31518899..31518940,31519529..31519627,31519700..31519834,31519985..31520087,31521721..31521794,31521887..31521930,31522053..31522131,31522252..31522365,31522502..31522606,31522687..31522821,31523596..31523664,31523739..31523842,31523959..31524007,31524591..31524683,31524762..31524870,31525279..31525415,31525511..31525588,31525675..31525764,31526062..31526127,31526206..31526298,31526371..31526499,31526684..31526782,31528026..31528172,31528265..31528570))
AA seq 2034 aa
MPLFMSEEELRLLGGDVAAVAERADAAIRELRQQVDTVRAEADAAAIAAEQTCALLEQRY
DTLSAEADRFRAELAELAAASERRAADLASSQSEIHQLRIQAIAKDGEIERLKVEISEVH
KSKSQSLELIEQRDAEIREKDGIIQNYLDKIVNLADSSASKGARIQEVEAKFTHLQATCN
RITQEKDLLEKHNLWLDEELKEKVKNLAELRKSNMDEEARMSAKVAELERETSESSSSLR
RSKERVSELEQRVSYMEKELCSTKDAAAANEQRLAAELSTVMKLAELHKESSEEWSKKAG
ELEGVIKALETHLTQVEDEYKEKLEKETSAKRDLEMEATYLKQKLEKCESDLENTRKSSE
LSFTPLVAADPCDLAGSPMKEMAFSDPANQNDLMIVPKVPTGVSGTALAASLLRDGWSLA
KIYEKYQEATDALRHERFGRRHAEAVLERVLHEIEEKAELILDERAEHRRMVEAYALMDQ
KLQQALLEHDNFENTIRNLKSELKRRERDHSIAQKEIDDLQKQIAVLLKECQDIQLRCGS
SLPNVGDGALSTSTSTGVPEVENNIHEHMTFNDINGLVQQNVQLRNQVHLLSADLDKRDM
ELRESFQIELKKITDDAASRVEKVMKKSEEQAIMIESLHRSVAMYRKLCEEQQKSRSNVE
HIPKNLEDDGRKDLMVLFEGSQEVSRKAYEQVSERAKSLDEELTKLRTELLSLRSERDKA
VLEAEFARERLNGFTAELEHQRKEANSISLRNAELMHLVVDYEKRLRENSESMKAVEENS
RKLLMEMSILKNEKEILAKSEKKALEEVHDLTTRVHRLQATIDTIHATEEVQENARSIER
RNQEEYIKRLERDWAEVKKELQEQRDHVRVLTLDKKNAFDGCLKQVEDMRKELQNSWKAA
TDAESRAAVAEAKCSDLETKLKSRKTIFRDGGRDILSATEENDELFQLKEELEKYKEEAQ
ANKSYMLQYKEIANSNESALKQMESALQDFKTESETIKKSLEDEITKLRTKISELEKCYI
MKCEEAASAIEAKEKDTTSLMKEISVLRNEVSEKVIQIEKLETELASSKRALDEQYKRWR
SAQDNYERQVILQSETIQELTSASKELSSLQQEIIVLRQTVETQKAENDGLRTLGEQEKI
ELVKGKDEALQKYNELNDQNKILHNQLEALHIRLAEKERNIAGLSSQRIDSHGEDDLHSV
IGYLRRSKEIAETEISLLKQEKSRLQIELESALKSTKEAQDLLRSQTDSARTSMLKDEEF
KSLQFQVRELNLLRESNIQLREENKHNFEECQKFHDEAQKAKMEAERLHNLLLEKQVDAE
ICKKEIEMQKTEIANLNQKISELVENSRGVDLSTYETMKDELQNIKATLRENSAELERTK
KLLSEKDSVIRNLEEKLAGCQSELDAREKKLNDVEASLKSEIDRHRKININIKRKLDASA
KEKEELTKEKQSLSKQLEDLKSTGQKTTTENSNEQAIKEKDFRIQTLEKVLEKERDDNKK
EKAFRRRNEKVFTTAIQNMNQERKQVEESIEKHRQAVKEVIEHYTGISSQIPSGSAIDEQ
LRSYFLAIKAVEESPSPFQDGAASQTPSVESADVDASAATAGRQVATPPRPAQVKVVEER
AVSTLPKPSTEVRRPGGRRPLVRPSLERVEEPQADIDTTVVEGSTEKGGLLMERETPGGV
SALQPSSRKRLIPSPQTRDDASQGETTDANPPLKKPKEGSSQCTSELKTEQSPHEDVMAP
VPVLPSTELDEQQPGEEMDTDQSSLPVEEVEETREDDLGDKDDMETHIDASMDIQGQDAE
TGIDNDATTVEDVPVKSEAVMESLEEDLKTEDGKEEGQFTATTDVEDEREEGELPDEPEQ
PDSTPPVLDVGEQAGDSFRAASPAGPTEKSDVDMPEETGEGDGTMESDQSPVPQSGGADA
SPSQMADASPSPAREPSPNPVQAGAPPEQQNPTPPNPVQAGASSEQQNPATAAEGVETRS
TRTINLTERARQNRQARILRSATQQNARGRGNQSLTYRKDGGRGTRGRGGRGQS
NT seq 6105 nt   +upstreamnt  +downstreamnt
atgccgctcttcatgtcggaggaggagctgcggctcttgggcggtgacgtggccgccgtc
gccgagcgggccgacgccgccatccgcgagctccggcagcaggtggacaccgtccgtgcc
gaggccgacgcggcggccatcgcggcggagcagacgtgcgccctcctcgagcagcgctac
gacactctctccgccgaggccgatcgcttccgggccgagctagccgagctcgcggctgcc
tccgagcgccgcgccgccgatctcgcctcttcccagtccgagatacaccagctccgcatc
caagccattgcgaaggatggcgagattgaacggctgaaagtagaaatctcggaggtgcac
aagtccaagtcgcagtcactggaactaattgagcagagggatgcagagataagggagaag
gatggcatcatccagaactacctcgataaaatagtaaatctggcagactcttctgctagt
aaaggggcaaggatacaagaagttgaagctaagtttactcatctgcaggccacatgtaac
cgaattacgcaggagaaagatctgcttgaaaagcataatctctggcttgacgaggaactt
aaagaaaaagtgaagaacttagctgaactaaggaaatcaaacatggatgaggaggctagg
atgtcagcaaaggttgccgagcttgaaagagagacttctgaatcatccagttccttgagg
cgaagcaaagaacgggtttctgaattggagcaaagggtatcatatatggaaaaggagttg
tgctcaacaaaggatgctgcagctgctaatgaacaacgcctggctgcagagctttcaact
gtcatgaaacttgctgaacttcacaaagaaagttctgaggaatggtcaaaaaaagcgggg
gaacttgaaggtgttattaaagcattggagacacatttgacccaggttgaagatgaatac
aaggaaaagcttgagaaggagacttcagccaagagggaccttgaaatggaagctacctac
ttaaagcaaaagcttgaaaagtgtgaatctgatctggagaatacaaggaaatctagtgaa
ttgagcttcactccattggttgcagcagacccttgtgatctagcaggctcaccgatgaaa
gaaatggcattttctgatccagcaaatcagaatgatctaatgattgtaccaaaagtacct
actggtgtttctggaactgcattagctgcttctcttcttcgtgatggttggagtctcgct
aagatctatgagaaataccaagaagctactgatgctttgcgccatgagaggtttggacga
aggcacgcggaagcagttctggagagggtcttgcatgaaattgaagagaaagctgagctt
atcttggatgaacgagctgagcataggaggatggttgaagcttatgctctaatggatcag
aagttgcaacaagcattgctggagcatgacaattttgaaaataccattaggaatctaaag
tcagagttaaaaaggcgggaacgtgatcatagtattgctcagaaagaaatagatgatctg
caaaaacaaatagctgtccttttaaaggagtgccaagatatacagcttcgttgtggttct
agccttccaaatgtaggagatggtgctctttctacaagcacaagcactggagtgcctgaa
gttgaaaacaatatccatgagcatatgacattcaatgatatcaatgggttagtacagcaa
aatgtgcaactccggaatcaagttcatttgctctctgctgatcttgataaaagggacatg
gaactcagggagagcttccaaattgagttgaagaagattacagatgatgctgcgtccagg
gttgagaaagtgatgaaaaaatccgaagaacaagcaataatgattgaatcccttcacaga
tctgtagcgatgtataggaagctgtgtgaagaacaacagaagtcacgttccaatgttgaa
cacatacccaaaaatttggaagatgatggcagaaaagacctgatggttctatttgaagga
tcacaggaggtttcaaggaaagcttatgagcaagtttcagagcgtgccaaaagccttgat
gaagagctgactaagttgaggactgagcttctatctttgcgttctgagcgtgataaggcg
gttcttgaagcagaatttgctcgagaacgacttaatggatttacagcagagcttgaacac
cagaggaaggaagctaattctatttcgctaagaaatgcggaattgatgcatttagtagtt
gattacgaaaaaagattgcgtgagaactcagaatctatgaaggctgtagaggagaactca
cggaagctattaatggagatgtctattctaaagaatgaaaaagagatcttagcaaagtca
gagaaaaaagctttggaggaagttcatgatttgaccacgagggtgcatcgcctgcaggcg
accattgacacaatacatgccaccgaggaggttcaagagaatgcaaggtctattgaaagg
agaaatcaagaggagtacatcaagagactagaaagggactgggctgaagtgaaaaaagag
cttcaagagcaaagggatcatgtccgcgtcctgacgcttgataagaaaaatgcctttgac
ggatgtctgaagcaggtagaggatatgagaaaagagttacaaaattcatggaaagctgct
actgatgctgaatctagggctgctgttgcagaggcaaagtgttctgatttggagacaaaa
ctaaaatcaagaaagaccatttttagggatggtggtcgtgatatcttatcagcaactgag
gagaatgatgagcttttccagctgaaagaggagttggaaaagtacaaagaggaagctcaa
gcaaataaaagctacatgcttcagtacaaagaaattgcaaactcaaatgaatctgcattg
aagcaaatggagtctgcacttcaggatttcaaaaccgagtctgagactatcaagaaaagc
ttggaagatgagattacaaagttgaggaccaagatatctgaactggagaagtgttatata
atgaagtgtgaagaagctgccagtgcaattgaagctaaagagaaggataccacttctctc
atgaaggaaatctcagttttgagaaatgaagtttccgagaaagtaatacagattgaaaaa
ttagaaactgaactggcttcctcgaagagggctcttgacgagcagtataagcgttggcgt
agcgctcaggacaactatgagcgtcaggttattctgcaatcggaaacaatacaggagctg
acaagtgcttctaaggagctatcttctttgcagcaggaaatcatagtgcttcgtcaaaca
gtagaaacacagaaggctgaaaatgatggtctaagaacccttggagagcaagaaaagata
gagctggtgaaaggaaaggatgaggccttgcagaaatacaatgagctaaatgatcagaat
aaaattctacacaatcaactagaagctttgcacattagattagctgaaaaagaacgcaat
attgctggtctttcatcgcaacgcattgattcacatggtgaagatgatttgcatagcgtc
attggctacctgcgcagatcgaaagaaatagcagaaaccgagatatctttgcttaaacag
gagaagtcacggcttcagatagaattggaaagtgcattgaagtccacaaaggaggcacag
gacttgctccgcagtcaaactgatagtgcaagaacatcaatgctcaaggatgaagaattc
aagtcactgcaattccaggtgagagagcttaatttgcttcgtgaaagcaatatacagctt
agagaggagaacaagcataatttcgaagaatgccagaaattccatgatgaggctcaaaag
gctaaaatggaagctgaaaggttgcataatcttttactggaaaagcaggtagatgctgaa
atatgtaaaaaagaaatagagatgcagaagaccgaaatagctaatctaaatcaaaagatt
tccgagttggttgaaaatagtagaggcgttgatttgagcacatatgagaccatgaaggat
gaacttcaaaacataaaagcaaccttgagagagaattcggcagagctagagcgcacaaaa
aaacttctttctgagaaggattctgtaataagaaatttggaggaaaagcttgctggatgt
cagtctgaattggatgctagggaaaagaagctgaatgatgttgaggctagccttaaatct
gaaattgacagacataggaagattaatatcaacataaagaggaagcttgatgcatcagca
aaagagaaggaggaactgacgaaagaaaaacaaagcctttcaaagcaattggaagatctc
aaatcaacaggtcagaaaactacaacagaaaattcaaatgaacaggccatcaaagaaaag
gacttcaggatacagacattggaaaaagtcttggagaaagagagagatgataataagaaa
gaaaaagcattccgcagaaggaatgagaaagtatttactaccgccattcaaaatatgaat
caggaaaggaaacaagtagaggaatcaattgagaagcataggcaggctgtgaaagaggtg
attgagcattatactggaatatcctctcaaatcccatctggatctgcaatcgatgagcag
ctgcgttcatatttccttgccatcaaagctgttgaggagtctccgagtcccttccaagat
ggtgcagcaagccagacaccatctgttgaaagtgccgatgtggatgcatctgcagctact
gcagggagacaggtagctactccaccaaggcctgctcaagttaaagtggtggaggagaga
gcagtttctactttgcccaaaccaagcactgaagtacgtagaccaggaggaaggagacca
cttgttcgaccttcacttgaacgagttgaagaaccccaagctgatattgatacaacagta
gttgaaggttccacagagaaaggcggcttgttgatggagcgtgaaactcctggtggtgta
tctgcgttacagccatcaagtcgtaaacgtctaattccatcaccacaaacgagagatgat
gcttcacaaggagagacaacggatgccaatccaccactgaagaaacccaaagaaggatct
tcacaatgtactagtgagctaaaaactgaacagtcacctcatgaagatgtcatggcacct
gttcctgtgctaccatctacagagttagatgagcaacagcctggagaagagatggacacc
gatcagtcttccttgccagttgaagaggttgaggaaacaagggaggatgacttgggtgat
aaggatgacatggaaacacatatagacgcttcaatggacatccaaggacaagatgcagaa
actggtattgataatgatgcaactactgtggaagatgtgccagtcaagtcagaagcggtt
atggaatcactggaggaagacctgaaaactgaggatgggaaggaagagggtcagtttact
gcaaccactgatgttgaagatgagagggaggagggagagttgccagatgaaccagaacaa
ccagacagcactccccctgtgctggatgttggtgagcaagccggtgattctttcagggcg
gcatctccagcaggaccaactgaaaagagtgatgttgacatgccagaagaaactggagaa
ggtgatggtaccatggaatcagaccaaagccctgtaccacaatctggtggagcagatgcg
tcaccgagccaaatggctgatgcgtcaccaagccctgcacgtgaaccttctcctaaccca
gtccaagctggtgcacctcctgaacagcagaatcccacccctcctaacccagtccaagct
ggtgcatcttctgaacagcagaatcccgccactgcagcagaaggtgttgaaactcgtagt
accagaacaatcaacctaactgagagagcgaggcaaaaccggcaagccaggattcttcgc
tcagccactcaacagaatgcaaggggccgtggcaaccagtctcttacatacaggaaagat
ggcggccgaggaacacggggtcgtggtgggcgtggtcagtcgtag

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