Oryza sativa japonica (Japanese rice): 4330841
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Entry
4330841 CDS
T01015
Name
(RefSeq) THO complex subunit 5A
KO
K13174
THO complex subunit 5
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4330841
09122 Translation
03013 Nucleocytoplasmic transport
4330841
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4330841
03041 Spliceosome [BR:
osa03041
]
4330841
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
4330841
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
4330841
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FmiP_Thoc5
Motif
Other DBs
NCBI-GeneID:
4330841
NCBI-ProteinID:
XP_015626796
LinkDB
All DBs
Position
2:join(32790731..32790973,32791068..32791358,32791998..32792334,32792785..32793119,32793604..32793851,32794137..32794722,32794811..32794924,32795006..32795260)
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AA seq
802 aa
AA seq
DB search
MAAEPAAAEAMDVEAPARPTTTTSTVSTSKGKSPHDLLAETRASVEEVAARILAIKKDDA
PRTELRELVAQMSLLLITLRQANREILMEEDRVKAETEAAKAPVDSTTLQLHNLLYEKNH
YVKAIRACLDFQTKYPGIELVPTEEFHRAAPADIRDKTLAADASHDLMLKRLNFELVQRK
ELCKLHEKLEQRKSSLLDTIANQKKFLSSLPTHLKSLKKASLPVQQQLGMQHTKKLKQHH
AAELLPTPLYIVYTQFLGQKEAFGENIEVEITGSTKDAQMFAQQQAKQENAGTLSNGDNR
VDDDAIDDEEDAQRRRSRSRKSVVKEASNSVVAYQLHPLKVILHVYDTEESGAKRRKLMV
LRFDYLAKLNVVCVGIEDSKGLDHDILCNLFPDDTGLELPHQMAKLYAGEVPNFSEKDSR
PYKWAQHLAGIDFLPEVPLSVGDDSNRASRSADLSSGLALYRQQNRAQTILQRIRSRKVA
QMALTWQLDYLTKLKWPQIEHENAPWASRTPLCSLHSWSFTGIFPEPAPRSPLMVVGAAG
SVDSDMERRSVTHWEETESTREDGELLAVVPAENTPSVSKISHSEVSPEVRNHSRGLSLI
SKSATPSKLSISHSFGRNEDDLDLLMYSDSELEEQTFVDQEVEKVNLATDKSWEDYASRE
FTLVLSKTLKNGPKVMLEAKIAISMEYPVRPPFFTLQLLSGKTEALKWHNDLRAMEAEVN
LHILQVVPSSYEDYILTHQILCLAMLFDMHFDEDHGKRKVTSVIDVGLCKPVSGTMLTRS
VRGRDRRQTIYWRSADCSSSCL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggagccagcagcggccgaagccatggatgtcgaggcgccggcgcgaccaacc
accaccaccagcactgtatccacctcgaagggcaagtccccccacgacctcctcgcggag
acccgcgcctccgtggaggaggtcgccgcccggatcctcgccatcaagaaggacgacgcc
cccagaaccgagctccgggagctcgtcgcccagatgtccctcctcctcatcacgcttcgc
caggcgaacagggagatactgatggaggaggacagggtgaaggcggagacggaggcggcg
aaggcgcccgtggactccacgacgctgcagctgcacaaccttctgtacgagaagaaccac
tacgtgaaggccattagggcgtgcctcgacttccagaccaagtacccgggcatagagctc
gtgccgacggaggagttccaccgcgccgcgccggcggacatccgcgataagacgctcgct
gctgacgcgtcccacgacctcatgctcaagcgcctcaatttcgagctagtccagcggaaa
gagctatgcaagctacatgagaaattggagcagcggaagagcagtttgttggacacaatt
gcaaatcagaaaaagttcctttcgagcctcccaacccatttgaaatcactgaagaaagca
tcattgccagtgcagcagcagctggggatgcaacataccaagaaactaaagcagcatcat
gcagctgaactgcttccaactcctctatatatagtttacacgcagtttttaggacagaaa
gaagcattcggagagaatattgaagtggagatcactggaagcacaaaggatgctcagatg
tttgctcaacagcaagctaagcaggaaaatgctggcactttgtcaaatggtgataataga
gtggatgacgatgcaattgatgatgaagaagatgctcaaagaagaaggtcaaggtcaaga
aaaagtgttgtgaaggaagctagtaattcagtagtggcatatcaacttcatccccttaaa
gttattctccatgtatacgacactgaagagtctggagcaaagcgtcgtaagctcatggtc
ctgagattcgactacttggcaaagttgaacgttgtttgtgttggaattgaagattcaaag
gggctggaccatgatatcctatgcaacttatttccagatgacactggtttagagttgcct
catcagatggctaaactttatgctggggaggttccgaacttcagtgaaaaggattcaagg
ccatacaagtgggcacaacatctagctggtatagatttcttgccagaagtgcctctatct
gttggtgatgattctaacagagcatcgagaagtgcggacttgtcatctgggcttgcttta
taccgtcagcagaatcgtgcacagactattttgcagagaatccgctcacggaaggttgca
cagatggctcttacgtggcagcttgattatttaactaagctgaagtggcctcaaattgaa
cacgagaatgcaccatgggcatcacgtaccccattgtgtagtctgcatagctggtcattt
actgggatatttcctgagccagcacctcgttctcctttgatggttgttggggctgcagga
agtgttgacagtgatatggagcgaagatctgtgacgcattgggaagaaactgagagtacc
agggaggatggggagcttctggccgtggttcctgctgaaaacacgccaagtgtttctaaa
atatcacactctgaagtgtcaccggaggttcgaaaccattctagaggcttatccctgata
tcaaagagcgccacaccatctaaactaagcatctcacacagttttggtagaaatgaggac
gatcttgatctcttgatgtatagtgacagtgagttagaggaacagacatttgttgaccaa
gaagtggaaaaagtcaaccttgctacagacaaatcctgggaggactatgcttccagggag
tttaccctggtcttgagtaaaactctgaagaatggtccaaaagtaatgctggaagccaag
attgcgatcagcatggaatatcctgttaggccaccttttttcacattgcaattgctttcg
ggaaagactgaagctttaaaatggcacaatgatcttagagcaatggaagctgaggtgaat
cttcacatccttcaggttgtaccttcgtcatatgaggactacatacttactcaccaaatt
ctgtgcctggctatgttatttgatatgcattttgatgaggatcatggtaaaagaaaggtt
acttcagtgattgatgtgggtctatgtaaaccagttagtggaaccatgcttaccagatca
gtcaggggaagagaccgcagacagactatttattggcgcagcgctgattgttcttctagt
tgtttatag
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