KEGG   Oryza sativa japonica (Japanese rice): 4330868
Entry
4330868           CDS       T01015                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04120  Ubiquitin mediated proteolysis
osa04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    4330868
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    4330868
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:osa04121]
    4330868
Enzymes [BR:osa01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     4330868
Ubiquitin system [BR:osa04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    4330868
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     4330868
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_RIG_2nd WDR55 Beta-prop_EIPR1 Beta-prop_WDR19_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st Beta-prop_HPS5 EIF3I zf-C3HC4_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML WD40_RFWD3 zf-C3HC4 Beta-prop_TEP1_C WD40_like zf-C3HC4_3 Beta-prop_WDR75_1st zf-RING_2 Beta-prop_SCAP zf-C3HC4_4 zf-RING_UBOX Beta-prop_DCAF12 Beta-prop_WDR35_TULP_N zf-RING_5 Beta-prop_IFT140_1st U-box zf-rbx1 RING_XB3-XBAT31 zf-RING_10
Other DBs
NCBI-GeneID: 4330868
NCBI-ProteinID: XP_015627602
UniProt: Q6ZHH4 Q0DX70
LinkDB
Position
2:complement(join(33023750..33023920,33024056..33024166,33024537..33024716,33024792..33024896,33025165..33025263,33025356..33025511,33025604..33025682,33026045..33026110,33026214..33026368,33026507..33026866,33026982..33027137,33027611..33027688,33028303..33028644))
AA seq 685 aa
MGDSTVAGALVPSVPKQEQAPSGDASTAALAVAGEGEEDAGARASAGGNGEAAADRDLLC
PICMAVIKDAFLTACGHSFCYMCIVTHLSHKSDCPCCGNYLTKAQLYPNFLLDKVLKKMS
ARQIAKTASPIDQFRYALQQGNDMAVKELDSLMTLIAEKKRHMEQQESETNMQILLVFLH
CLRKQKLEELNEIQTDLQYIKEDISAVERHRLELYRTKERYSMKLRMLLDEPAASKMWPS
PMDKPSGLFPPNSRGPLSTSNPGGLQNKKLDLKGQISHQGFQRRDVLTCSDPPSAPIQSG
NVIARKRRVQAQFNELQEYYLQRRRTGAQSRRLEERDIVTINKEGYHAGLEDFQSVLTTF
TRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFSTVVNEPSDV
HCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEHEKRAWSVD
FSRTEPSMLVSGSDDCKVKVWCTKQEASAINIDMKANICSVKYNPGSSHYVAVGSADHHI
HYFDLRNPSAPVHVFGGHKKAVSYVKFLSTNELASASTDSTLRLWDVKENCPVRTFRGHK
NEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPAANHRFVSSDLDDADDDPGSYFISAV
CWKSDSPTMLTANSQGTIKVLVLAP
NT seq 2058 nt   +upstreamnt  +downstreamnt
atgggtgactcgacggtggccggcgcgctggtgccatcggtgccgaagcaggagcaggcg
ccgtcgggggacgcgtccacggcggcgttggcggtggcgggggagggggaggaggatgcg
ggggcgcgcgcctccgcggggggcaacggggaggccgcggccgacagggacctcctctgc
ccgatctgcatggcggtcatcaaggacgccttcctcaccgcctgcggccacagcttctgc
tacatgtgcatcgtcacgcatctcagccacaagagcgactgcccctgctgcggcaactac
ctcaccaaggcgcagctctaccccaacttcctcctcgacaaggtcttgaagaaaatgtca
gctcgccaaattgcgaagacagcatcaccgatagaccaatttcgatatgcactgcaacag
ggaaacgatatggcggttaaagaactagatagtcttatgactttgatcgcggagaagaag
cggcatatggaacagcaagagtcagaaacaaatatgcaaatattgctggtcttcttgcat
tgcctcagaaagcaaaagttggaagagctgaatgagattcaaactgacctacagtacatc
aaagaagatataagtgctgtggagagacataggttagaattatatcgaacaaaagaaagg
tactcaatgaagctccgcatgcttttggatgaacctgctgcatcaaagatgtggccctca
cctatggataaacctagtggtctctttcctcccaactctcggggaccacttagtacatca
aatccagggggtttacagaataagaagcttgacttgaaaggtcaaattagtcatcaagga
tttcaaaggagagatgttctcacttgctcggatcctcctagtgcccctattcaatcaggc
aacgttattgctcggaagaggcgagttcaagctcagtttaacgagcttcaagaatactat
cttcaaagacggcgtaccggagcacaatcacgtaggctggaggaaagagacatagtaaca
ataaataaagaaggttatcatgcaggacttgaggatttccagtctgtgctaacaacattc
acacgatatagtcgcttgcgtgtaattgcggagctaagacatggagatctgtttcactct
gcaaatatcgtatcaagtatcgaatttgaccgtgatgatgagctatttgctactgctgga
gtctcaaagcgcatcaaagtcttcgagttttctacagttgttaatgaaccatcagatgtg
cattgtccagttgttgaaatggctactagatctaaactcagctgccttagctggaacaag
tactcaaaaaatgttatagcaagcagcgactatgagggtatagtaactgtttgggatgtc
caaacccgccagagtgtgatggagtatgaagaacatgaaaagagagcatggagtgttgat
ttttctcgaacagaaccctcgatgctagtatctgggagtgatgattgcaaggtcaaagtg
tggtgcacaaagcaagaagcaagtgccatcaatattgatatgaaggccaatatttgctct
gtcaaatataatcctgggtcgagccactatgttgcagtgggttctgctgatcaccatatt
cattattttgatttgcgaaatccaagtgcgcctgtccatgtttttggtgggcacaagaaa
gctgtttcttatgtgaagttcctgtccaccaatgagcttgcgtctgcatcaactgatagc
acattacggttatgggatgtcaaagaaaattgccctgtaaggacattcagagggcacaag
aatgaaaagaactttgttgggctgtctgtaaataacgagtacattgcctgcgggagtgaa
acgaatgaggtttttgtttaccacaaggctatctcaaaacctgctgccaaccacagattt
gtatcatctgatctcgatgatgcagatgatgatcctggctcttattttattagcgcagtc
tgctggaagagcgatagccctaccatgttaactgctaacagtcagggcaccattaaagtt
cttgtacttgctccttga

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