Oryza sativa japonica (Japanese rice): 4330902
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Entry
4330902 CDS
T01015
Symbol
OsJ_08582, OsRPA70a, RPA1A, RPA70A
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03030
DNA replication
osa03420
Nucleotide excision repair
osa03430
Mismatch repair
osa03440
Homologous recombination
osa03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4330902 (OsJ_08582)
03420 Nucleotide excision repair
4330902 (OsJ_08582)
03430 Mismatch repair
4330902 (OsJ_08582)
03440 Homologous recombination
4330902 (OsJ_08582)
03460 Fanconi anemia pathway
4330902 (OsJ_08582)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
osa03000
]
4330902 (OsJ_08582)
03032 DNA replication proteins [BR:
osa03032
]
4330902 (OsJ_08582)
03400 DNA repair and recombination proteins [BR:
osa03400
]
4330902 (OsJ_08582)
Transcription factors [BR:
osa03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
4330902 (OsJ_08582)
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
4330902 (OsJ_08582)
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
4330902 (OsJ_08582)
MMR (mismatch excision repair)
4330902 (OsJ_08582)
DSBR (double strand breaks repair)
HR (homologous recombination)
4330902 (OsJ_08582)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
Rep-A_N
REPA_OB_2
tRNA_anti-codon
OB_MEIOB_N
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
4330902
NCBI-ProteinID:
NP_001388917
LinkDB
All DBs
Position
2:complement(join(33328545..33330234,33331294..33331574))
Genome browser
AA seq
656 aa
AA seq
DB search
MAMARLTPNGVAAALAGDTNLKPVLQIVELRGVQVNGAGVTRGERFRAVVSDGTAASSAL
FAAQLSDHARSGALRRGSIVQLSEYVINEVGPRRIIVILNLEVLVSECEIIGNPTALSET
GSPIPNPTRVEQFNGAPQYGLMAGNSSNTTTKPSDNVPLFQNSMAGNSSNFATRPSDKVP
VFQPTVQPSYRPAPNYKNHGAIMKNEAPARIIPISALNPYQGRWAIKARVTAKGDIRRYH
NAKGDGKVFSFDLLDSDGGEIRVTCFNALLDRFYEVVEVGKVYVVSRGNLRPAQKNYNHL
NNEWEILLENGSTVDLCPDENSSIPTQRFDFRPINEIEDAQNNAILDIIGVVTSVNPCTT
IQRKNGMETQKRTMNLKDMSGRSVEVTMWGDFCNREGSQLQGMVERGIFPVLAVKAGKVS
DFSGKSVGTISSTQLFINPDSAEAHSLRQWFDSGGRDASTQSISRDITPGASRNEIRKTV
AQIKDEGLGMGDKPDWITVKATVIFFKNESFFYTACPNMIGDRQCNKKVTKSTNGNWTCD
KCDREFEECDYRYLLQFQIQDHSGTAWVTAFQEAGQELLGCSATELNALKEREDPRFADT
MLNCLFQEYLLRLKVKEESYGDERKVKNTAVKVEKVDPSGESKFLLDLISKSSALH
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggcgatggcgaggctgacgccgaacggcgtggcggcggcgctggcgggggacacgaac
ctgaagccggtgctgcagatcgtcgagctgcggggcgtccaggtcaacggcgcgggcgtc
acgcgcggggagaggttccgggcggtggtctccgacggcaccgccgcgtcctccgcgctc
ttcgccgcgcagctcagcgaccacgcccgatccggcgccctccgacgcggcagcattgtg
cagctcagcgagtacgtcatcaacgaagtcggccccagaaggattattgtcattctgaac
ctggaagttcttgtttcggagtgtgagataattgggaatcctacagcgctttcagaaact
ggatctcctatcccaaatccgacaagagtagagcaatttaacggagcacctcaatatggt
ttgatggcagggaactcatcaaatacaaccacaaagcctagtgacaatgttccattgttc
caaaattcgatggcaggaaactcctctaactttgccactaggcccagtgacaaagttccg
gtcttccaaccaacagtccagccatcttatcgccctgcacctaattacaaaaaccatgga
gcaatcatgaaaaatgaagcccctgctagaataatccccatatctgctttaaatccttat
caaggccgctgggctatcaaggctagagttactgccaagggagatatccgccgataccat
aatgctaaaggtgatgggaaagtattctcttttgacttgcttgattctgatgggggagag
atacgggtgacatgcttcaatgctcttcttgatcgattctatgaagttgtggaagttggt
aaggtctatgtggtatcaagaggaaacttgagacctgcacagaagaactataaccatctt
aacaatgagtgggagattttattggagaatggatcaactgtggatctttgtcctgatgag
aacagttccattcccacccagcggtttgacttcagaccgatcaatgaaattgaggatgcc
cagaacaatgctatccttgacatcataggtgttgttacatcggtcaatccttgcaccaca
atacagaggaaaaatggcatggaaactcagaaaagaactatgaacctgaaggatatgtct
ggtcgaagtgttgaggtaaccatgtggggtgacttttgcaacagagaaggctcacagctt
caaggaatggttgaacgtgggatctttcctgtgctggctgtcaaagcaggaaaagtgagt
gatttcagtggcaagtctgtcggcacaatttcttcaactcagctcttcatcaaccctgat
tctgctgaagctcatagtctcaggcaatggtttgatagtggaggaagagatgcttctact
cagtccatatccagagatatcacgcctggagcatcaaggaatgagatccgaaagacagta
gcacagatcaaggatgaaggtcttggaatgggggacaaacctgactggattacggtgaaa
gccaccgttatattcttcaagaatgagtccttcttctacacagcttgccctaacatgatt
ggcgacaggcagtgcaataagaaggtgacaaagagtactaatggcaattggacctgtgac
aaatgcgatagggagtttgaagagtgcgactacaggtatctcctgcagtttcagattcaa
gatcactcgggaacagcttgggtgacagcattccaggaggctgggcaggagttgcttggc
tgctcggcaacagagctcaacgcacttaaggagcgcgaggaccctcggtttgcagacacc
atgctcaattgcttgtttcaggaatatctgctcaggctgaaggtcaaagaagaatcatac
ggcgatgagcgcaaagtgaagaacaccgcggtcaaagtggagaaggttgatccttcgggt
gaaagtaaatttctgctggatttgatctccaagtcctcggcgctacattag
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