KEGG   Oryza sativa japonica (Japanese rice): 4330931
Entry
4330931           CDS       T01015                                 
Name
(RefSeq) probable NOT transcription complex subunit VIP2
  KO
K12605  CCR4-NOT transcription complex subunit 2
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4330931
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4330931
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     4330931
  mRNA degradation factors
   3'-5' decay
    Ccr4-NOT complex
     4330931
SSDB
Motif
Pfam: NOT2_3_5_C
Other DBs
NCBI-GeneID: 4330931
NCBI-ProteinID: XP_015627123
UniProt: Q6K823 Q0DX09
LinkDB
Position
2:complement(join(33656415..33656486,33656573..33656717,33657926..33657967,33658090..33658142,33658335..33658766,33658906..33658983,33659061..33659146,33660864..33660965,33661030..33661236,33662252..33662612,33662739..33662902,33662985..33663093,33663744..33663761))
AA seq 622 aa
MSGLLNSNLNNSASNLQDSTGRPFTGSFSGQSGSVPGGFHHSGLHNMHGSLNMPNMPGSF
SQRNAAMSGLPSSGVQQPGGSMPGRFASNNLPVGMSQIPHGHSGVGSRGLNVGGGPAFSS
SLNIGGTIQGLSSNLGAGGSRNSVPGMSVSPSLGNLGPRITGSVGNIVGGSNIGRNISSG
GLSVPSIASRMNLSGNVGSGGLNVQGSSRMMNGILQQGSPQMLNMMGSLYPTSGGSLSQN
QIQGGNNSLGSMGMLHDASDGAPFDMSDFPQLTGRPSSAGGPQGQYGSLRKQGVGVNTIV
QQNQEFSIQNEDFPALPGYKGNTTDYAMELHHKEQLHDNVPVMQAQQYPMSRSVGFNLGS
NYPPNRQQHQQGANSVQNAGPPNIGLRPLNSPNQTSSLGSYEQLIQQYQQPQAQNPFRLQ
QVSSATQSYRDQSLKSIQGGQTPSDPYGLMGLLGVIRMNDVDLSSLALGIDLTTLGLNLN
SPDNLYKTFGSPWSNEPAKGEPEFHTPACYSAEQPPPLQPIHFQKFQTPTLFYIFYSMPR
DEAQLCAASELYTRGWFYHKEVRVWLTRIPNVEPLVKTPHYERGSYGCFDPNNWETIRKD
NFVLHYDQIEKKPAIPSSQNVR
NT seq 1869 nt   +upstreamnt  +downstreamnt
atgtcgggcctgctgaattcaaacctgaacaattctgcatcaaatcttcaagactcaact
ggaagaccgtttacagggtccttttctggtcaatctggatcagttccagggggtttccat
cactctggtttgcacaacatgcatggaagtttaaatatgccaaatatgcctggatcgttt
tctcagaggaatgctgccatgagtggccttccatcctctggggttcaacagcctggaggg
agcatgcctgggagatttgcttcaaacaaccttccagttggcatgtcccagatccctcat
ggtcattcaggagtcggtagtagaggattgaatgttggtggaggtccagcatttagtagt
agcctgaatattggtggtaccattcaaggcttatcctcaaacctgggtgctggtggtagt
cgtaattctgttcctgggatgtcagtatctccatctttgggaaatttgggtcctaggatc
actggttctgtaggaaatattgtgggtggaagtaacattggaaggaatataagctctggt
ggattatctgtgccaagcatagcatcacgcatgaatttgagtggcaatgttggcagtggc
ggtctgaatgtccaaggatccagcaggatgatgaatggcattcttcagcaaggatcacct
caaatgctgaacatgatggggagtttatatccaacatctggaggttctttatctcagaac
caaatacaaggaggaaataattcccttggttctatggggatgctgcatgatgccagtgac
ggtgctccatttgacatgagtgattttccccagctgactggtcgacctagttctgcgggt
ggtccacaaggacaatatggctccctacggaagcaaggagttggtgttaacaccattgtt
cagcaaaaccaggaattcagcattcaaaatgaagacttcccggctttacctggatacaaa
ggcaacactacagattatgctatggagttgcatcacaaggaacaacttcatgataatgta
cctgttatgcaagcgcaacaatatccgatgtcaagatcagttggctttaacttaggaagt
aactacccaccaaatcgtcagcaacaccagcaaggtgctaattcagttcagaatgctggt
cccccaaatatcggactaagaccactaaattctccaaatcaaacttctagtttgggatca
tatgagcaacttatccagcaataccagcaacctcaggctcaaaatcctttcagattgcag
caggtgtcttcagctacccagtcatatagggatcagagtctaaagtccatccaggggggc
caaacaccatctgatccatatggcttgatgggattgctaggagttatcaggatgaatgat
gttgacttatcatctcttgctttaggaatagatttgacaacattgggtttaaacttgaac
tcaccagacaatctgtacaagacatttggctctccatggtcaaacgagccagcaaaagga
gaacctgagtttcatactccagcttgctactccgctgagcaacctccaccactacaacct
atacattttcagaaattccagacgccaacactgttttacatcttctatagcatgccaagg
gatgaagctcagctatgtgctgctagtgagctgtatactcgaggatggttctaccataaa
gaagtgcgtgtgtggctcaccagaattccaaatgttgagcctctggtcaaaacacctcat
tatgaacgaggatcttatggttgctttgatccaaacaactgggagacaatccgcaaggac
aactttgttctccattatgatcaaatagagaagaagccagctatcccttcatcccaaaac
gttaggtga

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