Oryza sativa japonica (Japanese rice): 4330978
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Entry
4330978 CDS
T01015
Name
(RefSeq) autophagy-related protein 18B
KO
K17908
autophagy-related protein 18
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
4330978
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
osa04131
]
4330978
03029 Mitochondrial biogenesis [BR:
osa03029
]
4330978
Membrane trafficking [BR:
osa04131
]
Autophagy
Autophagosome formation proteins
Atg18-Atg2 complex
4330978
Mitochondrial biogenesis [BR:
osa03029
]
Mitochondrial quality control factors
Mitophagy factors
Autophagy-related proteins
4330978
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROPPIN
WD40
Beta-prop_EML_2
WD40_WDHD1_1st
WD40_Prp19
WD40_CDC20-Fz
BCAS3_WD40
Beta-prop_WDR90_POC16_2nd
WDR55
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_IFT140_1st
Beta-prop_Vps41
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_TEP1_2nd
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
4330978
NCBI-ProteinID:
XP_015627655
UniProt:
Q6K9M2
A0A0P0VQK8
LinkDB
All DBs
Position
2:complement(join(34125991..34126147,34126253..34126312,34126389..34126499,34126575..34126720,34126801..34126920,34127312..34127424,34127551..34127642,34127825..34127934,34128057..34128130,34128490..34128563,34128704..34128771))
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AA seq
374 aa
AA seq
DB search
MASSSSPPPPPQIRCASFNQDNSLFYVGTKDGFRIFDAHTGKLHYQKNIGGIGNMEMYFR
TNILAIVGTGEQPVLSPRCLRLIDTVAAVTKKDLNFKTSVLAVRLSRTRLVVVLQDRTFI
YDVNSTTILEEIETVPNTKGLCAFAPNSEACYLAIPASTSKGSALVYKASEPELICQIDA
HESPLAAMAFSSNGTYLATASGKGTIIRVFLVAQATKSHSFRRGTYPSTIYSLSFGPSDD
LPDVLVATSSSGSLHMFFLDAARNRRNQTSKLLGSMIPGAITRALDPANHHIIHNVIPAG
IKSCVAVHKVENSQNSSKLPALRTVVYIITHDGYFREYSINTTKSNESSWVLQRELNLLD
TGCSTPQREEQHKD
NT seq
1125 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcagctcgtcgccgccgccgccgccgcagattcgttgcgcctccttcaatcag
gacaacagcttgttttatgtcgggacgaaggatggattcaggattttcgatgcccataca
gggaagctccactaccagaagaatattggtggaatcggcaatatggaaatgtactttcgg
acaaacattcttgctatagtcggaactggtgaacagcctgtactatctcctcgctgcctt
cgccttatcgacaccgtagcagctgtcacaaagaaagatctgaactttaagacttcagtt
ttggctgttcgattaagtagaacgaggcttgttgttgtattgcaggacaggacctttatt
tatgatgtaaacagcactactatattggaagaaattgaaacagttcccaatacaaaaggt
ctttgtgcattcgctcctaattcagaagcatgttatttggccatcccagcaagcacatcc
aaaggatctgctttagtttataaggcatcagaacctgaattaatatgccagatagatgct
cacgagtctcccttagctgcaatggcattttcttctaatggcacgtacctggcaacagct
tctgggaagggtactattattagagtatttctcgttgcacaagcaaccaagtcacacagt
tttcggcggggaacatacccatcaacaatatattcactctcattcggaccatcggatgat
ctgcccgatgttcttgttgccacaagttcatcaggctcgttgcacatgtttttcctcgat
gctgccagaaatcgaaggaaccaaacgagcaaattgcttggttcaatgattcctggagca
ataactcgtgctttggatccagcaaaccatcacattattcacaacgtcatccctgcagga
atcaagagctgtgtagccgtacataaggtcgaaaattcacaaaattcttctaaacttcct
gctttaaggactgttgtctatatcataactcatgatggatacttccgcgagtactcgatc
aacaccacaaagtcaaatgaatcttcctgggttttgcaacgcgagctcaatctactggat
accggttgtagcactccccagcgggaggaacaacacaaggactga
DBGET
integrated database retrieval system
