Oryza sativa japonica (Japanese rice): 4331133
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Entry
4331133 CDS
T01015
Name
(RefSeq) exosome complex component csl4
KO
K07573
exosome complex component CSL4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
4331133
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331133
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
4331133
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Core exosome
4331133
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Motif
Pfam:
EXOSC1
ECR1_N
RRP4_S1
CHASE5
RRP40_S1
ECR1_N_2
Motif
Other DBs
NCBI-GeneID:
4331133
NCBI-ProteinID:
XP_015626600
UniProt:
Q0DWG8
A0A0P0VR39
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All DBs
Position
2:complement(join(35440594..35440682,35440825..35440906,35441099..35441183,35441369..35441457,35442251..35442325,35442416..35442589))
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AA seq
197 aa
AA seq
DB search
MAATAMDHDGGEVVTPGELLGNSSLLAGLGAYADGRCVRASITGHRRLVPPPPGSTDQRS
TVEVVGHKAHGAVPQPGSVVIARVTKVMARMASADIMCVDSKAVKEKFTGMIRQQDVRAT
EIDKVDMFQSYRPGDIVRALVLSLGDARAYYLSTAQNELGVVSAQSITGGTLVPISWTEM
QCELTGQIEQRKVAKVE
NT seq
594 nt
NT seq
+upstream
nt +downstream
nt
atggcggccacggcgatggaccacgacggcggcgaggtggtcacccctggggagctcctc
ggcaactcgtccctcctagcggggctcggcgcctacgccgacggccgctgcgtgcgcgcg
tccatcactggccatcgccgcctcgtgccgcctcctcccggctccaccgatcagaggtcc
acggtggaggtggtcgggcacaaggcccatggagctgtgccgcagccgggaagcgtcgtc
attgcgcgtgtgacgaaggttatggctaggatggcttctgcagatataatgtgtgttgac
tcaaaggctgtcaaggaaaagttcactggcatgataaggcagcaagatgttcgtgcaact
gaaatcgacaaggtggatatgtttcagtcataccgacctggtgatattgtcagagccctg
gttctctctcttggtgatgcaagggcatattacctttccactgcccagaatgaactcgga
gttgtttctgcacaaagtataactggtggtacactagtcccgatcagttggactgagatg
caatgcgaattgacgggccaaatagagcaaaggaaagttgcaaaagtggaatag
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