KEGG T01015: 4331489

Oryza sativa japonica (Japanese rice): 4331489

Entry

4331489           CDS       T01015

Symbol

OJ1528D07.1, OsJ_09265, OspolD2, POLD2

Name

(RefSeq) DNA polymerase delta small subunit

K02328

DNA polymerase delta subunit 2

Organism

osa Oryza sativa japonica (Japanese rice)

Pathway

osa03030

DNA replication

osa03410

Base excision repair

osa03420

Nucleotide excision repair

osa03430

Mismatch repair

osa03440

Homologous recombination

Brite

KEGG Orthology (KO) [BR:osa00001]
09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    4331489 (OJ1528D07.1)
   03410 Base excision repair
    4331489 (OJ1528D07.1)
   03420 Nucleotide excision repair
    4331489 (OJ1528D07.1)
   03430 Mismatch repair
    4331489 (OJ1528D07.1)
   03440 Homologous recombination
    4331489 (OJ1528D07.1)
09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:osa03032]
    4331489 (OJ1528D07.1)
   03400 DNA repair and recombination proteins [BR:osa03400]
    4331489 (OJ1528D07.1)
DNA replication proteins [BR:osa03032]
Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase delta complex
    4331489 (OJ1528D07.1)
DNA repair and recombination proteins [BR:osa03400]
Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase delta complex
      4331489 (OJ1528D07.1)
   MMR (mismatch excision repair)
    DNA polymerase delta complex
     4331489 (OJ1528D07.1)

SSDB

Motif

Pfam:

DNA_pol_E_B DNA_pol_D_N

Other DBs

NCBI-GeneID:

4331489

NCBI-ProteinID:

NP_001404098

LinkDB

Position

3:complement(join(1620697..1620756,1621151..1621218,1621285..1621386,1621552..1621679,1621756..1621847,1621952..1622023,1622118..1622186,1622270..1622353,1622446..1622561,1622666..1622770,1622906..1623029,1623101..1623207,1623879..1624008,1624088..1624120))

AA seq 429 aa
MERKQAEYSNLDERYAIQGEKYQGQQYSHIYFTRLHHMRNLLHALVPSWKPHLPVTTVLG
LEEGKDCIIVGTLYKHMKLKPSILDEYSKERSAIPLVKPHNFMHPDDHLILEDESGRVTL
AGAIPPAAYVTGVVIALHGKETSAGNFLVEDILEAGIPPQITLPSINEDKYVVFVSGLSI
GSEKFNPLQFQLLIDHITGHLGDENEQSIASNIVRVVVAGNSVHISPRFFNGQAVASKDQ
SRIAEPIKELDIMLTQLVASLPVDMMPGSNDPANFSLPQQPLHRCLFAGAATYNTFSSCS
NPHQFELDSVRFIGTSGQNIDDLYKYSDAKDKLEFVERTLRWRHLAPTAPNSLGCYPYTD
KDPFLVESCPHVYFVGNQDKYETQLLQGLEKQKVRLICIPRFCDSGVAVMLNLRNLECST
LSFSTSFDA

NT seq 1290 nt +upstreamnt +downstreamnt
atggagaggaagcaggcggagtacagcaacctcgacgagaggtacgcgatccagggggag
aagtaccaggggcagcagtacagccacatctacttcacgcgactccaccacatgcgcaac
ctcctccacgccctcgtcccctcctggaagccgcaccttcctgttactactgtgttggga
cttgaagaaggaaaggattgcataatcgttggaactttatataagcacatgaaattaaag
ccttccattcttgatgaatattctaaggagaggtctgctattcctcttgttaaaccacac
aatttcatgcatcctgatgatcatctcattctggaagatgaaagtgggagagttacactt
gcaggagccatacctccagcagcatatgttactggagttgtaatagctttacatgggaaa
gaaacaagtgctggcaactttcttgttgaagatattcttgaggctgggattcctcctcaa
attacgttacctagcataaacgaggacaaatatgtggtatttgtgtcgggattaagtatt
gggagtgaaaaattcaatcctctgcaattccaacttcttatagaccatatcacagggcat
ttgggtgatgagaatgagcaatccatagcatccaacatagtacgtgttgtggtggctggg
aattcggtacatatttctccaagattcttcaatggtcaggcagtagcatcgaaagatcaa
tccaggatagctgaaccaatcaaagaattggatataatgctcactcagcttgtggcatca
ttgcctgtggacatgatgcctggatctaatgacccagcaaatttttctttgcctcaacag
cctttgcatagatgcctttttgctggagcagccacttataacactttttcatcgtgctcg
aatccacatcaattcgagcttgatagtgtccggtttattggaacatctggacagaacata
gatgacctctacaagtactctgatgccaaagacaagctggaattcgtggaaagaacactg
cggtggcgtcatcttgctccaactgctccaaacagtctaggatgttatccatacacagac
aaggatccttttctcgttgaaagctgtccccatgtttacttcgtcgggaatcaagataaa
tatgaaactcaattattgcaagggctagaaaaacaaaaagtgaggctgatctgcattcca
agattttgtgatagtggagttgctgtcatgctcaatttgaggaacttggagtgcagcacg
ttgagtttctcaacaagcttcgatgcttga

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