KEGG   Oryza sativa japonica (Japanese rice): 4331556
Entry
4331556           CDS       T01015                                 
Name
(RefSeq) splicing factor U2af large subunit B-like isoform X1
  KO
K12837  splicing factor U2AF 65 kDa subunit
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4331556
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:osa03041]
    4331556
Spliceosome [BR:osa03041]
 Complex A
  U2 snRNP components
   U2 related factors
    4331556
 Complex B
    4331556
SSDB
Motif
Pfam: RRM_1 RBD_DEAH11 RRM_9
Other DBs
NCBI-GeneID: 4331556
NCBI-ProteinID: XP_015630379
UniProt: Q10S20
LinkDB
Position
3:complement(join(2111799..2112519,2112598..2112677,2112936..2113028,2113112..2113219,2113350..2113439,2113572..2113613,2113854..2113925,2117186..2117323,2117412..2118962))
AA seq 964 aa
MSRRVQNEKDSRRITSDGTAARTRPLSIQDIMSRREKKTASEAKKTKEGLEENSNGKSNH
LESGRGSKSRKDVREMPLEGSKKDNSDKPGEGSKKDEMRHTPREERRKDNMRDMQREVSK
KDNLKDRPKDISKIDNLKVKVKVPSKDDQRDAPKKSSKKERSSTRDDSHLVDKDKGNHNS
HKLSTYTSGRVGKSRGGNHGEITARDGDATIQESQKRPGKRWIDEPVGNDRIKERSERRT
DGKRNSRGFDDEKSSQVDRPTLKKQDAVRLQDPRHFDRKDGRKENAKLHHEEPRSKRRRS
TSRDHYQERHDRSVSPSSREQRHSYRGHGHDYYPPYHSMDKSRRKHFETDRHRTSWNDGY
SSGSYRRYESRLGGYSPRKRKTAPKDEQTTIKTASLVIRSPEKKSATWDQLPVATDLSNF
VTTLQSTVGLKDSTVPVNFTTSKQDPNTTIGTILTGSNLAVDSVQLTQATRPLRRLHIEN
LPSLATEDMLIGCLNEFLLSSSASHIQRSKQPCLSCVINKDKRQAFVEFLTPEDATAALS
FDGRSFGGSSLKIRRPKEYVEMAHVAPKKPSEEIKLISDVVADSPHKIFIAGISGVISSE
MLMEIVSSFGPLAAYRFLFNEYLGGACAFLEYIDHSITSKACAGLNGMKLGGGILTAVNV
FPNSTEQAFNEASPFYGIPDSAKSLLEEPTKVLQLKNVFDQEEYLLLSKSELEEILEDVR
VECARFGAVKSINVVKYPASSDNTTGDTITECEDGSTKIEPKEYGGNVSCTETGVECSVL
NQSTDVPDPSICEVQDPVELDTDSIPKGRDHKNLDTRGECDAPTAGDENTDQGVEADQTD
STDAQDDARGTIERGHADADPASLETSCSTAPGDGADKSGRENEQQGGAGVSESNTEKAP
AVDARDNALASNTSALEAGCILVEFLRKEAACIAAHSLHGRRFGSRIVSAGYAPHDLYLQ
KYPR
NT seq 2895 nt   +upstreamnt  +downstreamnt
atgagtagaagagtacagaacgaaaaggattctaggagaatcactagtgatgggacggct
gctcgcacaaggcctttgagcattcaggatatcatgtcgcgtcgtgaaaagaaaaccgct
tcagaagctaagaaaaccaaggaagggctcgaagagaacagtaatggtaaatccaatcat
ctggaatcaggaagagggtccaaaagcagaaaggatgtcagagaaatgcccttggagggc
tccaaaaaggataatagtgataaaccaggggagggttccaagaaggatgaaatgagacat
acgccaagggaagagcgtagaaaggacaacatgagagatatgcaaagagaggtctccaag
aaagacaacctgaaagataggccaaaagacatctccaagatagataacttgaaagttaaa
gtgaaggtcccatcgaaagatgatcaaagagatgcaccaaagaagagctccaagaaagag
cggtcctccacaagagatgatagtcatttagttgacaaagacaaaggcaatcataattct
cataagcttagcacatacacgagtggtcgagttggcaaaagcagaggtggaaaccatggt
gagattacagcaagagacggtgatgcaacaatacaggaatcccaaaaaagacctgggaaa
agatggattgatgaaccagttggtaatgatagaatcaaggagaggagtgagaggcgaact
gatggaaagagaaatagccgtggctttgatgatgagaagagttctcaggttgatcgaccc
acactgaagaaacaagatgctgtgcgattacaagatcccagacattttgatagaaaagac
gggaggaaagagaatgcaaaactgcaccatgaagagcccaggtcaaaaaggagaaggtcg
acaagcagggatcattatcaagaaagacatgacaggtctgtctcaccatcctcaagagaa
caaaggcatagctatcgtggacatggccatgattattatcctccatatcactccatggac
aaatcaagaaggaagcattttgaaactgacagacatagaacatcttggaatgatggatac
agtagtggatcttaccggagatatgaaagtcggcttggtggatattcaccaaggaaaagg
aaaacagcaccaaaagatgaacagacaactatcaagactgcttctctggttattcggtct
ccagaaaagaaatcagccacatgggatcagcttcctgtggcaacagatctatctaatttt
gttaccactttgcagtcaacggttggtctaaaggattccactgttccagtcaattttacc
acatcgaagcaggacccaaacactacaattggaactatattgacagggagtaatttggct
gttgattctgtccagctgacacaagcaacccgaccactcaggagattgcacattgaaaat
ctaccaagtttagccacagaagacatgctgattggctgcttgaatgagttcttgctgtca
tctagtgcgagccatatccagaggtccaaacaaccatgcctcagttgtgtgataaacaag
gacaaacgtcaggcctttgttgaatttcttacaccagaggatgctacagcagctctttct
tttgacggacggtcttttggtggatcttctttgaaaattagacgccccaaagaatatgtt
gaaatggcacatgttgctcctaagaagccttctgaagagattaaattgatatccgatgtt
gttgcagattcaccacacaagattttcatcgctgggatttctggagtgatttcatctgag
atgctcatggaaattgttagttcatttggtccgttggctgcttaccgctttctttttaat
gaataccttggtggggcatgtgcatttcttgagtacattgatcactccattacatcgaag
gcatgtgctggcctcaatgggatgaagcttggtggaggcatcctaactgctgttaatgtg
ttccctaactctaccgagcaggcttttaatgaagcttccccattttatggaattcctgac
agtgccaaatcactacttgaagaaccaacaaaagtcctgcagctaaaaaatgtgtttgac
caagaagagtatttgctactctcaaaatctgagctggaggaaatattggaagatgtacgt
gtggagtgtgcaaggtttggagctgtgaaatccataaatgtcgtaaagtaccctgctagc
agtgacaacactacaggggataccataaccgagtgtgaagatggatccaccaagattgag
cccaaagaatatggtggcaatgtcagctgcactgagactggagtggaatgttctgtgttg
aatcagagtacagatgttcctgatccttctatttgtgaggtccaggatcccgtagagctt
gacacagattctattcccaagggtcgggaccacaaaaatcttgacacacgtggcgagtgt
gatgcacctacagcaggagacgagaatactgatcaaggagtggaagctgatcagacagat
tctacggatgctcaagatgatgctcgtggaactatagagagagggcatgcagatgcagat
ccggcgtccttggaaacttcttgttccacagcacctggagatggagcggacaaatctggt
agggagaacgagcaacaaggtggtgctggtgtgagtgaaagcaacacagagaaggcacct
gcagttgatgctagagacaacgctttggcttcaaacaccagtgcgctcgaagctggctgt
atacttgtagagttcttgcgcaaagaggctgcatgcattgcagctcattcactacatgga
cggcgttttggcagcaggattgtctctgcaggatatgctccacatgatctttacttacag
aagtatccgaggtga

DBGET integrated database retrieval system