KEGG   Oryza sativa japonica (Japanese rice): 4331645
Entry
4331645           CDS       T01015                                 
Name
(RefSeq) cell division cycle protein 48 homolog
  KO
K13525  transitional endoplasmic reticulum ATPase
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa04141  Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04141 Protein processing in endoplasmic reticulum
    4331645
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4331645
   03009 Ribosome biogenesis [BR:osa03009]
    4331645
   04131 Membrane trafficking [BR:osa04131]
    4331645
  09183 Protein families: signaling and cellular processes
   04147 Exosome [BR:osa04147]
    4331645
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Ran-mediated transport factors
     4331645
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  Pre-60S particles
   Ribosome quality control proteins
    4331645
Membrane trafficking [BR:osa04131]
 SNARE
  SNARE associated proteins
   Others
    4331645
 Autophagy
  Aggrephagy
   Other aggrephagy associated proteins
    4331645
Exosome [BR:osa04147]
 Exosomal proteins
  Exosomal proteins of haemopoietic cells  (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
   4331645
SSDB
Motif
Pfam: AAA AAA_lid_3 CDC48_N RuvB_N AAA_16 AAA_2 AAA_5 AAA_33 AAA_22 CDC48_2 AAA_14 TIP49 NPHP3_N RNA_helicase nSTAND3 Mg_chelatase AAA_28 AAA_17 ATPase_2 Parvo_NS1 AAA_18 AAA_lid_PRS2_C ABC_tran IstB_IS21 Viral_helicase1 Vps4_C AAA_7 NACHT NB-ARC TsaE DUF815 AAA_24 ResIII Zeta_toxin Zot
Other DBs
NCBI-GeneID: 4331645
NCBI-ProteinID: XP_015631157
UniProt: A0A8J8Y500 Q10RP0
LinkDB
Position
3:complement(join(2861607..2861903,2861999..2862358,2862442..2862723,2862795..2862866,2862959..2863180,2863266..2864032,2864367..2864595,2865188..2865350,2865474..2865511))
AA seq 809 aa
MASQGEPSSSSDPKGKKDFSTAILERKKSPNRLVVDEATNDDNSVIGMHPDTMEKLQLFR
GDTVLLKGKKRKDTICIVLADDTCEEPKIRMNKVVRKNLRVRLGDVVSVHQCPDVKYGKR
VHILPIDDTVEGITGNLFDAFLKPYFLEAYRPLRKGDLFLVRGGMRSVEFKVIETDPAEY
CIVAPDTEIFCDGEPIKREDEERLDEVGYDDVGGVRKQMAQIRELVELPLRHPQLFKSIG
VKPPKGILLYGPPGSGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE
KNAPSIIFIDEIDSIAPKREKTHGEVERRIVSQLLTLMDGLKARSHVIVMGATNRPNSID
PALRRFGRFDREIDIGVPDEVGRLEVLRIHTKNMKLAEDVDLEHIAKDTHGYVGADLAAL
CTEAALQCIREKMDIIDLEDETIDAEILNSMAVTNDHFKTALGTSNPSALRETVVEVPNV
SWEDIGGLENVKRELQETVQYPVEHPEKFEKFGMSPSKGVLFYGPPGCGKTLLAKAIANE
CQANFISVKGPELLTMWFGESEANVREIFDKARQSAPCVLFFDELDSIATQRGSSVGDAG
GAADRVLNQLLTEMDGMNAKKTVFIIGATNRPDIIDPALLRPGRLDQLIYIPLPDDQSRL
QIFKACLRKSPVAKDVDLNALAKYTQGFSGADITEICQRACKYAIRENIEKDIEMEKRRK
DNPEAMEEDEVDDIAEIKAAHFEESMKYARRSVSDADIRKYQAFAQTLQQSRGFGTEFRF
ADQPASGAGAAADPFASAAAAADDDDLYS
NT seq 2430 nt   +upstreamnt  +downstreamnt
atggcgagccagggagagccctcctcctcctccgatccgaaggggaagaaggatttctcg
acggcgatcctcgagaggaagaagtcgccgaaccggctggtggtcgacgaggccaccaac
gatgataactccgtcatcgggatgcaccccgacaccatggagaagctccagcttttccgc
ggcgacactgtgctgctcaagggtaagaagagaaaagacaccatctgcattgttcttgct
gatgacacctgcgaggagccgaagatcagaatgaacaaggttgtcaggaagaacctgaga
gtacgacttggtgatgtcgtgtctgttcatcaatgcccagatgtcaaatacggcaagcgt
gtgcacatacttccaattgatgatactgttgagggcatcaccggaaacttgtttgatgcc
ttcctgaaaccgtacttccttgaagcataccgtcctttgaggaaaggagaccttttcctt
gttaggggtgggatgagaagtgttgaattcaaagttatagagactgaccctgcagagtac
tgcattgttgcacctgatacggagatattctgtgatggtgagcctattaagagggaggat
gaggaaagacttgatgaagttggttacgatgatgttggtggagttaggaagcagatggcc
caaatcagagaacttgttgagctcccattgcgccatccccaacttttcaagtctattggt
gtgaagcctccaaagggcatactgctttatggaccccctggctctggaaagaccctcatt
gctagagctgttgctaatgaaacaggtgctttcttctttctgattaatggcccggagatt
atgtcaaagctagcaggagaaagtgagagtaatctcaggaaggcatttgaagaagctgag
aagaatgcaccatcaatcattttcatcgatgagatagactccatagcaccaaagagagag
aagacccatggagaagttgagaggcgcatcgtttcacagctgttgactcttatggatggg
ctcaaagctcgttcccatgtcattgtcatgggtgctacaaaccggccaaacagtattgat
cctgctctcagaaggtttggtaggttcgatcgggagattgacattggtgttcctgatgaa
gttgggcggcttgaagttcttcggattcacaccaaaaacatgaagctggctgaagatgtt
gacctggaacacattgccaaagacactcatgggtatgtgggtgctgatcttgctgctctt
tgcactgaggctgctctccaatgcatccgtgagaagatggatattatagatcttgaggat
gagaccatagatgctgagatacttaactcgatggctgttacaaatgatcacttcaagact
gcactagggacaagcaacccgtctgctctccgtgaaactgttgttgaagttccaaatgtc
tcttgggaggatattggtggactggagaatgtcaaacgggagctgcaggagactgtccaa
tatccagtggagcatcctgagaaatttgagaagtttggcatgtctccgtccaaaggtgtt
ctgttctatggccctcctggctgtggtaagactttgttggccaaggcaattgctaacgag
tgccaggctaacttcattagtgtcaagggacctgagctgcttaccatgtggtttggtgag
agtgaggccaatgtgcgtgagatttttgacaaggctaggcagtcagctccttgtgtcctc
ttctttgatgagcttgactcaattgctacccagagaggaagcagtgttggtgatgccgga
ggtgctgctgatagagtgctgaaccagttgttgactgagatggacggcatgaacgcgaag
aaaaccgtgttcattattggtgctactaacaggccagatatcattgaccctgccttgcta
aggccagggcgtcttgatcagcttatctacattcctctgcctgatgatcaatctaggctg
cagatcttcaaagcttgcctccggaagtcacctgtggccaaggatgtagacctgaatgct
cttgccaaatacacccaaggtttcagtggtgctgatattacagaaatctgccagcgtgca
tgcaaatacgccatcagagagaacattgaaaaggacatcgagatggagaagcggaggaag
gacaaccctgaagccatggaggaggacgaggttgatgatattgctgagatcaaggcggct
cacttcgaggagtcgatgaagtacgcacgccggagtgtgagtgacgccgacatccgcaag
taccaggccttcgcccagactctgcagcagtctcgtgggttcggcaccgagtttaggttc
gctgaccagccagcgtctggcgccggcgccgccgctgaccccttcgcatccgctgccgcc
gcagctgacgatgatgatttatatagttag

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