KEGG   Oryza sativa japonica (Japanese rice): 4331677
Entry
4331677           CDS       T01015                                 
Name
(RefSeq) protein RRP6-like 2
  KO
K12591  exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    4331677
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4331677
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Exosome cofactors
     4331677
SSDB
Motif
Pfam: DNA_pol_A_exo1 HRDC
Other DBs
NCBI-GeneID: 4331677
NCBI-ProteinID: XP_015631122
UniProt: Q10RJ0 A0A8J8XN55
LinkDB
Position
3:join(3113559..3113906,3114514..3114669,3115460..3115618,3115722..3115805,3115957..3116036,3116136..3116186,3116304..3116403,3116683..3116765,3116903..3116948,3117242..3117329,3117426..3117595,3117734..3117847,3117914..3118021,3118404..3118619)
AA seq 600 aa
MDEFKGPGEKEKEEEAGDKAAAEEAGDGFQVVRGKKKKRPNGGSASGAGSGTMMAKDKAA
AAAAAEPWTKAKVSFHDPNIPRPQDVYAIRVNNYNVPFDHVWLERTEDGSRPIHPLEKLP
MEQFIDRNVPESEPVKPADLEDTPFTLVEDKNGLADLAKKLKSVNEFAVDLEHNQYRSFQ
GLTCLMQISTRTEDFVVDTLKLRIYIGLYLKEHFKDPTKRKVMHGADRDIMWLQRDFHIY
VCNLFDTGQASRVLQMERNSLEHLLRHFCGVTANKEYQNADWRSRPLSDEMIKYAREDTH
YLLYMYDLMRLRLQKESTSDNDLLLEVQKRSNEICLQLYEKELLTDTSYLHIYGLQEHDL
DAKQLAVVYALHQWRDYIAREVDESTGYVLPNKALIEIAKKMPTDTAELKRMVKSKYPFV
DENLDQVVGIIWNATESSYAFESRAEQLKKERLEQLTDRVQTISSPEMKTSMNLSGQIRS
MDKEILSDNIHQQVAQATFQELKRPMALGAVGNSTSGGQRDFFGGFSNKSEKMEKAKSYP
AFYYPQLPQYSPEVGYGFQSINRTMAGTAQSPTGNKERDLQNPRRRQSFPPSGNISDTHQ
NT seq 1803 nt   +upstreamnt  +downstreamnt
atggacgagttcaaaggcccaggggagaaggagaaggaggaggaggccggggacaaggcc
gcggcggaggaggcgggggacggattccaggtggtgcgcggtaagaagaagaagcggccc
aatggtggttcggcttcgggtgctgggtcggggacgatgatggccaaggacaaggcggcg
gcggcggcggccgcggagccgtggacgaaggcgaaggtgtctttccacgatcccaacatt
ccgcggccgcaggatgtgtacgcaatcagagtgaacaactacaacgtgccgttcgaccat
gtctggctagagcgcaccgaagatggcagccgccctatccaccctctggaaaaactgcca
atggagcagtttattgacagaaatgttcctgaaagtgaacctgtaaagccagctgatttg
gaggataccccatttacgctagttgaagataagaatggtttagcagacttagctaaaaag
ttgaagagtgtaaatgaatttgctgttgacttggagcacaatcaatataggtcatttcag
ggtttgacctgcttgatgcagatttcaacaagaacagaggattttgttgtagacaccctt
aaacttcgcatatacattggtctctacttgaaagaacattttaaagatccaaccaagaga
aaggtaatgcatggggctgatcgtgatattatgtggctccaacgggatttccacatatat
gtttgcaatctttttgacacaggacaggcttcaagggttttacagatggagcgaaacagc
ctagagcacctattgcgtcacttttgtggagtcacagcaaataaagaatatcaaaacgct
gattggaggtcaaggccactttctgatgaaatgataaagtatgctagagaagatacacac
tatctgttgtatatgtatgacttgatgaggttgagactgcaaaaggagtcgacatctgac
aatgatcttcttctagaggtgcaaaagcgcagtaatgaaatttgtttacagttgtatgaa
aaggaactgctgacagatacatcttatctccacatatacgggttgcaagaacatgacctg
gatgcaaaacagctggctgttgtatatgctctacatcaatggagagattatatagctcgt
gaagtagatgagagcactggttatgtgttaccaaataaggctttaattgagatagcaaag
aagatgcctacagatactgcagagttaaaaagaatggtgaaatcaaaatatccatttgtt
gatgaaaatctggaccaagtcgtaggcatcatatggaatgcaactgaatcttcttatgcc
tttgaaagcagagctgaacaactaaagaaggaacgtctggagcagctaacggacagggtt
cagactatatcatcacctgagatgaagacatctatgaacttatcaggccagattagatca
atggataaggaaatactgagcgataacatacatcagcaggtggcacaggctacttttcaa
gaactgaagagacctatggctttgggagcagtagggaattcaacatccgggggacagaga
gatttctttggagggttttcaaataagtctgagaagatggagaaggctaaatcctatcca
gccttttactacccccagcttccacaatatagccctgaagttgggtacggctttcaatca
ataaaccgaactatggcgggaacagcacagtctcctactggcaataaggagagggatctc
cagaaccctagaagacgtcaatctttcccaccttccggtaacataagtgatacacaccag
taa

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