Oryza sativa japonica (Japanese rice): 4331680
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Entry
4331680 CDS
T01015
Symbol
OJ1134F05.6
Name
(RefSeq) dEAD-box ATP-dependent RNA helicase 38
KO
K18655
ATP-dependent RNA helicase DDX19/DBP5 [EC:
5.6.2.7
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4331680 (OJ1134F05.6)
03015 mRNA surveillance pathway
4331680 (OJ1134F05.6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331680 (OJ1134F05.6)
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
4331680 (OJ1134F05.6)
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
4331680 (OJ1134F05.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
eIF-4B
Motif
Other DBs
NCBI-GeneID:
4331680
NCBI-ProteinID:
NP_001404153
LinkDB
All DBs
Position
3:join(3125295..3125558,3125671..3125964,3126076..3126303,3127154..3127219,3127722..3128123,3128194..3128305,3128862..3128947,3129024..3129089)
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AA seq
505 aa
AA seq
DB search
MADGGKPPTPEKKSWADVEEEEEAKAKAAAAAEAASSSSSNEPAVDAQAKQIEALSLSVP
EEHGGSGGGGDDQGPPLLDDSDESQIQAVTSGGTVYESAAAFEDLKLTPELLKGLHDEMG
FSRPSKIQAVTLPMILTPPYKDLIAQAHNGSGKTTCFVLGMLSRVDPNRKVTQAICICPT
RELAQQNKSVLMRMGKFTGITCACAIPPAQKDYVPIAKMPKITDQVVIGTSGTLMKWINH
KKILTNDIKILVFDEADHMLAEDGFRSDSERIMRDIQRSAGGCQVLLFSATFNERVKDFV
TRVIKDGNQIFVKKEELTLEKVKQYKVQVPDERAKIAVIKDKIFEFGQKVGQVIIFVRTK
QSTKDVHNALTLEDYVCSSIQGSLDQSEREKIIQEFKNGYTKVLISTDVLARGFDQAQVN
LVINYDMPIKFGTRDEPDYEVYLHRIGRAGRFGRKGAVFNLLCGETDNTVMRKIETYFQH
NVPEVRNWQSEEDFERALKDAGLVE
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atggccgacggcgggaagcccccgacgccggagaagaagtcgtgggccgacgtagaggag
gaggaggaggccaaggcgaaggcggccgcggcggcggaggcggcctcctcgtcttcgtcg
aacgagccggcggtggacgcgcaggcgaagcagattgaggcgctgtctctctccgtgccg
gaggagcatggcggcagcggcggcggcggggacgaccagggcccgcctctcctcgacgac
tcggatgagtcccaaatccaagccgtgacctcgggcggcacggtgtacgagtcggcggcg
gccttcgaggatctgaagctgacgccggagctgctcaaggggctccacgacgagatgggg
ttcagccggccgagtaagatccaggcggtgaccctccccatgatcctcacgccgccatac
aaggacctgatcgcgcaggcgcacaacggctccgggaagaccacctgcttcgtcctcggc
atgctcagccgcgtcgaccctaaccggaaggtcacgcaggccatctgcatctgccccacc
agggagcttgcccagcagaataaatcggtgcttatgagaatggggaagtttactggcatt
acctgtgcatgtgcgatcccaccggctcagaaagattatgtgccgatcgctaaaatgcca
aagattactgaccaggtggtgatcggcacttctgggacacttatgaagtggattaatcat
aagaagatcttgacaaatgatatcaagatacttgtgtttgatgaggcagaccatatgctt
gccgaggatggcttcaggagtgattctgaaaggattatgagggatatacaaagaagcgct
ggtggctgtcaggtgcttctcttttctgcgacattcaatgagagagttaaagattttgtt
acaagggtcattaaggatgggaatcaaatatttgtgaagaaggaagagcttactttggaa
aaagtcaagcaatataaagttcaagtccctgatgaaagggcaaaaatagcagtcataaag
gacaagatttttgagtttggacaaaaagttggacaggttatcatttttgttagaacaaag
caaagtactaaggatgtccacaatgctttgacattagaggactatgtatgctcctcgatt
caaggatcccttgaccaatcagagagggaaaagataatacaggaattcaaaaatgggtac
accaaggttcttatatcaactgatgttcttgctcgaggtttcgaccaagcacaggttaac
ctcgtcatcaattatgacatgccaatcaagtttggcacaagagatgaacctgattatgaa
gtgtacctgcacagaattggcagagctggtcgctttggccgaaaaggagctgttttcaac
ttgctatgcggcgaaacagataacactgtgatgagaaagattgagacctacttccagcac
aatgttcctgaggttcgtaattggcaaagcgaggaagattttgaaagagctctgaaggat
gccggcttggttgagtaa
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