Oryza sativa japonica (Japanese rice): 4331698
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Entry
4331698 CDS
T01015
Name
(RefSeq) probable RNA helicase SDE3
KO
K18422
helicase MOV-10 [EC:
5.6.2.5
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331698
03036 Chromosome and associated proteins [BR:
osa03036
]
4331698
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.5 RNA 5'-3' helicase
4331698
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
4331698
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Gene silencing
microRNA pathway
Other miRNA pathway proteins
4331698
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
MOV-10_beta-barrel
AAA_30
AAA_19
ResIII
UvrD-helicase
AAA_22
AAA_16
Mov-10_helical
LTD
UvrD_C_2
SLFN-g3_helicase
ATPase_2
AAA
Mg_chelatase
Helicase_RecD
AAA_5
Motif
Other DBs
NCBI-GeneID:
4331698
NCBI-ProteinID:
XP_015627765
UniProt:
A0A8J8XCL9
Q10RG1
LinkDB
All DBs
Position
3:complement(join(3225454..3225936,3226048..3227499,3227614..3227775,3227849..3228631))
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AA seq
959 aa
AA seq
DB search
MGTYVRNYSDDEFSVAGEKPDVEFMDYQNDGSIQDYSLEDAPVVVTVPFPFIDGKPKSVL
VGETSADTISIENTSSEPVNLWSVRIFSSNPEDSYVLSMMKPPLNDTDEEAKRNFLGLTS
VEDRTLQPGQTLTIWLSCTPKDIGLHTSIVHVDIGDEKIERVAFLLADDNVSQALFSDKP
YSRKHTQKKKFECSSFVPGCRPTRQHSQGFKFKLPQFAIPADIRELIQSKQRPDVLSEEL
NMTNYAKFFSTLLVMEEINLEEEMRSYDMERILMRRRGLEFLSLEVPGLAEKRPSLVHGD
FIFVRHAGSDARPYQGFIHKVEADEIFLKFDNQFHLAHRDRNQYDVSFTYNRLNMRRLYK
AIHEAELLGPDILFPCRSSSGSVKKGPFKPLNPHINTEQADAVATILGCRGVAPYVIYGP
PGTGKTMTLVESILQLYTAKRRANVLICAASNSAADHVLAKLLQASYLIRPSDIFRLNAA
SRQYEDVDPDFIRFCFFQDMVFKCPPLQALLRYKIVISTYMSSSMLQSEGIRRGHFTHIF
LDEAGQASEPEAMVPLSGLCGRDTVVVLAGDPMQLGPVVYCKQAEKDGLGKSYLQRLLFE
YEQYSTGDPNYVTKLVRNYRCHPAILELPSELFYGGELIACKEDEVSSIYDSIDLPNKSF
PVLFVGIQGCDEREGNNPSWFNRIEASKVVNIIRNLTRGGDVREADIGVITPYRQQVVKI
KKALETFEMPDLKVGSVEQFQGQEREIIIISTVRSTVKHNEFDKFFNLGFLSNHRRFNVA
ITRAKSLLIIIGNPHIITKDRHWDRLLRYCADNGSYQGCPLPPPEETQVSGFRDSQDEPA
RWGYNQQQESSANYSYKQDPHDSGSEHVNGLPSTENEVEWSEKTLNEEHQPCSSAAEADS
PEFMLKQKAEEEEHVEQDGVQPEQCPAKDNKLQDAYAAKYSFPPEWCDVSNIPATGWDD
NT seq
2880 nt
NT seq
+upstream
nt +downstream
nt
atgggcacttatgttaggaactattcagatgatgaattctctgtggctggcgagaagcca
gatgtagagttcatggactatcagaatgatggctctattcaagattattcactcgaagat
gcccctgtggttgtcacggttcctttccctttcatcgacggcaaaccaaaatctgtcctt
gttggagaaacatctgccgacaccattagcatagaaaatacctcttctgaacccgtgaat
ttgtggagtgtgagaatattttcttccaatccagaagacagttatgtgctttctatgatg
aaaccaccactgaatgatactgatgaggaagcaaagaggaattttcttggtttgacttct
gtggaagatcgtacactccagcctggacaaacccttacaatttggctctcctgtacgcca
aaagacattggtttgcatacatcaatcgtccatgttgatatcggtgatgagaaaatcgag
cgtgtggcttttctattggccgatgataatgtttcccaggctttattttctgacaaaccc
tattccaggaaacacactcagaagaagaagtttgagtgcagttcatttgtgccaggttgt
cgaccaactcggcagcatagtcaaggattcaagttcaagctccctcagtttgcaatacct
gcagacatccgcgaactcattcaaagtaaacagagacctgatgtcctatctgaagagctg
aacatgacaaactatgcaaaattctttagcactcttttagtcatggaagagataaatttg
gaggaggagatgagatcatatgacatggagcgtatcttaatgaggaggaggggtctcgaa
tttttgtcacttgaggtccctggcttggctgagaaaaggccttcactagtccatggagat
tttatatttgtcagacatgctggaagtgatgctcggccttatcagggtttcattcacaag
gttgaagcggatgagatatttttgaaatttgataatcagttccaccttgctcaccgtgac
aggaatcagtacgatgttagtttcacatataatagactgaacatgagaaggctttacaag
gctatccatgaagcagaacttttgggacctgacattctatttccctgtcgatcatcctcc
ggaagtgtgaagaaggggccgtttaaacctctaaatccacatataaacactgagcaagct
gatgcagttgcaacaatacttggctgccgaggggttgcgccatacgtgatatacggacct
ccaggaactgggaagaccatgacccttgtggagtctattttgcagctttatacagccaag
aggagggcaaatgtcctcatatgtgctgcttctaatagtgctgctgaccatgtattggca
aagcttcttcaggctagctatctgattcgaccaagtgacatatttaggctaaatgctgcc
agccgtcaatatgaggatgtcgatcctgattttattcgattttgcttctttcaagatatg
gtgttcaagtgtcctccattgcaagcactattgcggtacaagatagttatatcaacctac
atgagttcatcgatgctgcagtctgaaggcattcgtcgggggcatttcacacacattttt
ttggatgaggctggtcaagcctctgaaccagaggctatggttcctttgtcgggtttgtgt
ggaagagacactgtggttgtgttagcaggtgatcccatgcaattagggccagtggtttat
tgtaaacaagcagagaaggatggtttggggaaatcgtatctgcaaaggctgctctttgaa
tacgagcagtacagcacaggggatcctaactatgtgacaaagctagtgaggaattatcga
tgccatccagcaatcctggaattaccatcagaacttttctatgggggagaattaattgcc
tgtaaagaagatgaagtgtcgtctatttatgacagcattgatcttcctaacaagtcgttc
cctgttctttttgttggcattcagggatgtgatgagagagaaggaaataatccttcatgg
tttaataggattgaagctagtaaagtagtaaatatcattaggaatctgacaaggggtggt
gatgttcgtgaagctgacataggagtcattactccatatcgacaacaagttgtcaagata
aagaaggcacttgagacatttgaaatgcctgacttgaaagtgggaagtgtcgaacaattc
cagggtcaggaaagggaaataataatcatctccacagtcaggtctacagtaaagcataat
gagtttgacaaattcttcaacctgggattcttaagcaatcacagaaggttcaatgttgca
atcactcgtgccaaatctttgctaattatcataggaaaccctcacattatcactaaggat
cggcattgggataggctcctgaggtattgtgcagacaatggttcttaccaaggatgccca
cttccaccaccagaagagacccaagtctctggatttcgtgacagccaagacgaacctgct
aggtggggttacaaccaacaacaagagtcatctgctaactacagctacaagcaagaccca
cacgactctggttccgaacatgtaaatggtttgccctccactgaaaatgaagtggaatgg
tctgagaagacgctgaatgaggagcaccagccatgtagcagtgctgctgaagcagactct
cctgagttcatgctgaagcagaaggctgaggaagaggaacatgttgagcaagatggcgta
cagcctgagcaatgtccagccaaggacaacaaactccaagatgcgtatgcagcgaagtac
tcctttcctcctgaatggtgtgatgtttcaaatatccctgcaacaggatgggatgattga
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