Oryza sativa japonica (Japanese rice): 4331780
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Entry
4331780 CDS
T01015
Name
(RefSeq) nuclear pore complex protein NUP96
KO
K14297
nuclear pore complex protein Nup98-Nup96
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4331780
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4331780
03036 Chromosome and associated proteins [BR:
osa03036
]
4331780
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
4331780
Chromosome and associated proteins [BR:
osa03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
4331780
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup96
Nucleoporin2
Motif
Other DBs
NCBI-GeneID:
4331780
NCBI-ProteinID:
XP_015631620
UniProt:
Q10R44
Q0DUQ8
LinkDB
All DBs
Position
3:join(3870529..3872988,3873134..3873257,3873540..3873685,3873760..3873857,3874212..3874401)
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AA seq
1005 aa
AA seq
DB search
MSSDPVFPVLRHGDYFTKPSIDELVEREAADPGYCSRVPDFVVGRVGYGRIHFPGDTDVR
GMDLNGIVKFGRHSVEVYKDEASKPPLGQGLNKPAEVTLMLNLSVLPEPSALGELLKCQT
RKQGARFVSFNHSSGRWKFEVDHFSRFGLVDEEEEDVVMDEVVVRQPIAEVRDPPANGHE
LELSRSLPAHLGLDPAKMHEMRMTMFSNEEGDEDMEDGFPSDQRYFSSEKMNVDSPNSSA
KGLRLRSLSPLHGSSLKVSRRPGVIGRREPQALLEYSVNSSEHGPSSHGILMSGQNKGFP
VRMTKVDGFKLPSDQETPVAGNVYSNCVVDAALFMGRSFRVGWGPNGILVHSGSLVNRPG
TGLSSVIHIEKVAGDKVVRDEKNKIKEELTDLCFSDPLDLHRRLHHEYLETESDLFKLKL
QKVVASRFVLPDICRSYIDIIERQLEVSDLSMSSRVLLMHQVTVWELIRVLFSERATGNQ
LEPTGDEDQEGMILDKKEGTVAIDLEALPLVRRADFSNWLQDSVCHRVQGEAGSLNDARY
LEHIILLLTGRQLDTATEVAAFRGDVRLAILLSQAGGSMLNRSDLSQQLDLWKTNGLDFD
YIQEDRLKIYELLSGNVQGALVDSSIDWKRYLGLIMWYQLSPDASLDIIIHSYHQLLGEG
KVPYPVPVYIDEGPLDESLQWSPGDRFDISFYLMLLHANQDEKFGMLKTMFSAFSSSYDP
LDYHMIWHQCSILEAIGAFSSNDLHVLDLSFVYQLLCLGKCHWAIYVILHMPHLDDAPYI
HEKLIREILSQYCESWSKDETQRVYIAELGIPVEWMHDALALYNEYYGDQQSALENYILC
GNWKKAHTIFMTSIAHSLFLSSKHQEIWDITSSLEVHKSEIADWELSAGIYIDFFILRNS
MQEKSTMDDPDQLEKKNESCSTFFGRLNDSLIVWGSKLPVEARACFSKMAEELCELLMNS
PGEGLTPDLYMGCFQTMLNAPVPDDHRSSYLQEAVSVFTDILCRD
NT seq
3018 nt
NT seq
+upstream
nt +downstream
nt
atgtcttccgacccggtgttccccgtgctccgccatggcgattacttcaccaagccgtcg
atcgatgagctggtggagagggaggcggctgaccctggctactgcagcagggtcccggat
ttcgtcgtcgggagggtcgggtatgggcgaattcacttccccggtgacactgatgtgagg
gggatggacctgaatgggatcgttaagttcggtaggcactctgtggaggtttacaaggat
gaggctagcaagccgcctttagggcaaggtcttaataagccagcagaagtgacgttgatg
ctgaatttgagcgtgcttccagagcctagcgctcttggggagttgcttaagtgtcaaacg
agaaagcaaggcgctaggttcgtttcgttcaaccactcgagcggcaggtggaagttcgag
gttgatcattttagtcgattcggtcttgtggacgaggaggaagaggatgttgtgatggat
gaggtggttgttcggcagcctattgcggaagtaagagacccacctgcaaatggtcatgag
ctggagctttcacgttcgttgcctgctcatcttgggcttgaccctgcaaagatgcatgaa
atgcggatgacgatgttctccaatgaggaaggtgatgaagatatggaggatggattccca
tctgatcagagatacttcagcagtgagaagatgaatgtggattcaccgaactcaagtgct
aaaggtttgaggctaaggtctctctctcctttgcatggttcttctctgaaagtcagcagg
agacctggtgtaattggtaggagagaaccacaggctctgctggaatacagtgtaaattct
tcagaacatggcccatcttctcatggtattcttatgtctgggcaaaacaagggatttcca
gtgagaatgaccaaggtggatggctttaagttgccatctgatcaggaaactcctgtggct
gggaacgtatattccaattgtgttgtggatgctgctttatttatgggcaggtcatttcgt
gttggttggggaccaaatggcatccttgtacattctggcagtcttgtcaatagacccgga
actggtctatcttctgttattcacatagagaaagttgcaggcgacaaagttgtacgtgat
gagaagaacaaaattaaggaggagctgactgatctgtgcttctcagacccgctggatctc
cataggaggcttcatcatgaatatctggagactgagtctgacttgtttaaattgaagctt
cagaaggttgtggcaagtcgctttgtgttgccagatatttgcagatcttatattgacatc
attgaaaggcagcttgaagtcagtgatttatctatgtcttctcgtgtgctgttaatgcac
caggttacagtttgggagcttattcgggtcttgttctcagaaagagcaactggtaaccag
ttagagcctactggtgatgaggaccaggaggggatgattttagataagaaagaaggtact
gttgccatagaccttgaagcactccctttggttagaagagcagactttagcaattggtta
caggacagtgtttgtcatcgggttcaaggagaggcgggctccttaaatgatgccaggtat
ctggaacatattattctgcttttgactggtcggcaattagacacagccacagaagttgct
gcctttaggggtgatgttcgactggcaattttgctaagccaggcaggtgggtcaatgcta
aatcgttctgacctttctcagcaactggatctatggaaaacaaatggtctggattttgat
tatattcaggaagacaggttaaagatatatgagttgctttctggtaatgtacaaggcgcg
ttggtagattcatcaattgactggaaacggtaccttggtttaataatgtggtatcaacta
tcacctgatgcatcacttgatattatcattcactcttatcaccagctccttggtgagggc
aaagtcccatatcctgtacctgtatatatagatgaaggaccccttgatgagtcacttcaa
tggtccccaggtgaccgctttgacatatccttttatctaatgctgcttcatgcaaatcaa
gacgagaagtttgggatgctaaaaactatgttcagtgcattctcatcttcatatgatccc
ttggactaccatatgatctggcatcagtgttccattctggaagctatcggtgctttcagt
tcaaatgatcttcatgtgctagatttgagttttgtttaccaattattgtgtctggggaag
tgccattgggctatctatgtcattctacatatgcctcatcttgatgacgccccatacatc
catgagaagttgatcagggaaattttgtcacaatattgcgaatcatggagcaaggatgaa
actcagagagtttatattgcagaacttggtattccagtagaatggatgcatgacgctctg
gctctttacaatgaatactatggagatcagcaaagcgcactggagaattatattctgtgt
ggcaactggaagaaagcccatacaattttcatgacatccattgctcattctttgtttctg
tcatctaagcatcaagagatctgggacattacaagctctttggaggttcacaagtctgaa
attgctgactgggaacttagtgctggaatatacatagacttcttcattctaagaaattct
atgcaagaaaaaagtaccatggatgatccagatcaacttgagaagaaaaatgaatcatgc
agcactttctttggccggttaaatgattcattgatagtctggggaagtaaattacctgtt
gaggcaagggcatgcttctcgaagatggcagaggagctgtgcgagctactaatgaactcc
cccggcgagggcttgacgccagatctctacatgggctgctttcagacgatgcttaacgct
cctgtgcccgacgaccacaggtcatcctacctgcaagaggcggtctctgttttcaccgac
atactttgcagggactga
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integrated database retrieval system
