Oryza sativa japonica (Japanese rice): 4332383
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Entry
4332383 CDS
T01015
Name
(RefSeq) uncharacterized protein isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
4332383
03015 mRNA surveillance pathway
4332383
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4332383
03041 Spliceosome [BR:
osa03041
]
4332383
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4332383
Spliceosome [BR:
osa03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
4332383
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
Motif
Other DBs
NCBI-GeneID:
4332383
NCBI-ProteinID:
XP_015631610
UniProt:
Q10NF9
LinkDB
All DBs
Position
3:complement(join(9079998..9080745,9081202..9081321,9081410..9081490,9081592..9081729,9081808..9081921,9082013..9082747,9083445..9083542,9083683..9083769,9084209..9084376,9084931..9085053,9085177..9085266,9085371..9085391))
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AA seq
840 aa
AA seq
DB search
MSGGFFRGTSADQDTRFSNKQAKLLKTQKFAPELEHLVDMTKVKMDVMKPWIATRVTELL
GFEDEVLINFIYGLLEEKEADGKKIQIQLTGFMEKNTVKFMKELWSLLLSAQQNASGVPQ
QFLDAKEAEIQQKKAEESRIAQEIQKKREKDGREQELEKQKLMDGDAGNSRLGPDRADAE
EEKELDSKHSSRTKSRESLRSRSISLSPRGRRRSVSPRRRSPSPSRNSISFGRQQRSSRR
SVSPRRSFSPRKRSPRSTPSMSRRRSPYSRRSPSVPRHRSPSPHRRSHIRRKSPPFVRQR
SPSPHHRRSPGRAPRSPSPARHRSPRRRSSLDRHWSPSPGRRRPRSPSPGRRRPRSPSPG
RRRPRSPSPGRRRPRSPSPGRRRPRSPSPGRRRPRSRSPGRRRSPSPRGSPRLRSPKRPR
RSPISPRSRSANRRPSPQRRRSTSPHDRSPIHSRRSLSRDIEKGTNGIPSSNDVDVLQRN
KERSHDDNRNDTEVSGHLSSDSEHRKLTKSLNSPNKPERNSTRDSSLKGTDKHLPSQVRT
DSSGEEEGSRARENARKANSSRRKIKDFSADLELKKAHDDLSPGEKSPSQHSGKETRRKQ
NNQLSESSEDERDGRRTKHTVDSPDDSQQKQHTPSRVGMHNSYSKDGMNSEDAIKGLRDG
MASKKYPAKIDDDSESEDGSPFRKDKRKAHGNNNIDSGSSGSEESGKHRSHSEKRKHKKS
RKHKRRYDDSSDESNSESDDKESKRRRKEEKRLRKEERRRRREERHRRKADRQASKLKLK
HAETVDMASDLEKDRESDSDADARKKGSYNGRDESDQQKLEIELREKALESLRAKKAINH
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggcggcttcttccgggggacgtcggccgatcaggacacccgtttctccaacaag
caggcgaagctgctcaagacgcagaagttcgcgcccgagcttgaacacctggtggacatg
actaaggtgaagatggatgtgatgaaaccatggatcgcgacccgtgtcaccgagctccta
gggttcgaggacgaagtgctcatcaacttcatctacggcctcctcgaagagaaggaggcg
gatggaaagaagatacagatacagctgacaggattcatggagaagaacacagtgaagttc
atgaaggagctgtggagcctcctactcagtgcacaacagaatgctagtggggtgccccaa
cagtttttagatgcaaaggaagctgagattcagcagaaaaaggcagaggaaagtagaatt
gctcaggagatccagaagaaacgggagaaagatggaagggagcaagaactagagaaacaa
aaattgatggacggggatgccggtaattctagattaggtcctgatcgtgctgatgctgag
gaggaaaaagaactggattctaagcatagctcaagaacaaagagccgggaaagccttagg
tccaggagcatctccttgtcgcctcgcggtaggcggcgatctgtttctcctaggaggcgt
tctccatctccttccagaaattccatttcttttgggagacagcaacgatcttcaaggcgc
tcagtttcacctaggcgttctttttctccacgaaagcgttctccaagaagtaccccttcg
atgtcgaggcggagatcaccgtattccagaagatcaccttcagtaccaagacatcgatct
ccgtcacctcatcgtagatctcatattcgcaggaaatctccaccttttgtgcgtcagaga
tcaccatctccacaccatcgccggtctccaggtcgtgcaccaagatcaccatctcctgca
cgtcatagatctcctcggcgcaggtcatctctagacaggcattggtctccatctccagga
agacgtaggcctcggtccccttcacccggacgacgtaggccacggtccccttcacccgga
cgacgtaggccacggtccccttcaccaggaagacgtaggccacggtccccttcaccagga
agacgtaggccacggtctccatctccgggtagacgcaggccaaggtcacgatctccagga
agacgaagatccccctctcctcgaggctctccgcggttgaggtcaccaaaacgccctagg
agatcgccaatttcacccagaagtcgttctgcaaaccgtcggccctctccacaacgaagg
aggagtaccagtccacacgataggagcccaatccattctcgcaggagcttgagtagagac
attgaaaaaggaacaaacggcattccctccagtaacgatgtagatgtgcttcaaaggaac
aaagaaagatcacacgatgacaataggaatgatacagaagtgagtggccatctttcatcg
gattctgagcatcgtaagctgacaaaatccttgaattctccaaacaagccagaaaggaac
tcgacacgcgatagttctttgaagggcactgataagcacttgcccagtcaggtcagaaca
gatagcagtggagaagaggagggcagtcgtgcaagagagaatgcacgaaaagcaaattca
tcacgcagaaaaattaaggatttctcagcagatctggaactaaagaaagcacatgatgat
ttgagccctggagaaaaatctccatcacaacatagtggcaaggagacaaggaggaaacag
aacaatcaactgtcagagtcatcagaagatgagcgtgatggtagaagaacgaaacacacg
gttgattctcctgatgattcccaacagaaacagcacactcctagtagagttggaatgcac
aactcttattcaaaggatggcatgaacagtgaggatgcaataaagggtttacgtgacggt
atggcttctaagaagtatcctgctaaaatcgatgatgattctgagtcagaagatggaagt
ccttttcgaaaagataagagaaaagcacacggtaataacaacattgattctggcagttca
ggttcagaagaatcagggaaacatagatcccattctgagaagcgaaagcataaaaagagc
cgtaagcataagagacgttatgatgacagttctgatgaatctaattcggagtcagatgac
aaagagtccaagaggaggagaaaggaagagaagaggttgcgaaaagaggaaagacggcgc
agacgtgaagagcggcaccgtagaaaggcagaccgtcaggccagcaaactaaaactgaag
catgctgaaactgttgatatggcttcagatcttgagaaggatcgtgaatctgactcagat
gctgatgctaggaagaaaggttcatataatggaagagacgaatcggatcagcagaaactt
gaaattgagcttcgcgagaaggctctggaatctcttagagcaaagaaagccatcaaccac
tag
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integrated database retrieval system
