Oryza sativa japonica (Japanese rice): 4332518
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Entry
4332518 CDS
T01015
Name
(RefSeq) transcription factor bHLH140
KO
K10863
aprataxin [EC:
3.6.1.70
3.6.1.71
3.6.1.72
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
4332518
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
osa03400
]
4332518
Enzymes [BR:
osa01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.1 In phosphorus-containing anhydrides
3.6.1.70 guanosine-5'-diphospho-5'-[DNA] diphosphatase
4332518
3.6.1.71 adenosine-5'-diphospho-5'-[DNA] diphosphatase
4332518
3.6.1.72 DNA-3'-diphospho-5'-guanosine diphosphatase
4332518
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Other BER factors
4332518
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
4332518
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DcpS_C
AAA_33
Macro
zf-C2HE
HIT
AAA_18
KTI12
AAA
nSTAND3
ABC_tran
AAA_16
Zeta_toxin
AAA_24
AAA_29
SMC_N
AAA_5
AAA_22
NACHT
NB-ARC
MMR_HSR1
AAA_25
Motif
Other DBs
NCBI-GeneID:
4332518
NCBI-ProteinID:
XP_015628220
UniProt:
B9F7T0
LinkDB
All DBs
Position
3:join(10263181..10263238,10263338..10263492,10263872..10264824,10265007..10265631,10265719..10265889,10265982..10266317)
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AA seq
765 aa
AA seq
DB search
MDPDAGGSTAAPLPPASTAGASAASATVAEEGGGKQVMVVLVGPPGSGKSTFAEAVLGGS
AAGRTWARVCQDTIGNGKAGTKIQCLKAAADALKEGKSVLLDRCNLEREQRADFMKLGSH
VHVDVHAVVLDLPAKVCISRSVSRTGHEGNLQGGRAAMVVNRMLKNKETPLLTEGFSRIM
FCKDNNEIKKAVDMYSALGPSDSLDSGVFGQNSKGPVQVGIMKFLKKPGSSAEKSGGHKV
TPNESIPQMQNHISEQQNLEVGGTCTVESVKELSNSKKIEDQSRESVLSDISSRTLAFPS
ISTADFQFDLDRASDIIVDAVADILQKYDNIRLVLVDLSHKSRILSLVKEKAAKKNINSS
RFFTFVGDITQLQSKGGLRCNVIANAANWRLKPGGGGVNAAIYNAAGEDLQRATKECADT
LRPGSSVAVPLPSTSPLHQREGVTHIIHVLGPNMNPMRPDCLKNDYTKGSKILHEAYTSL
FENFVAIVQSCMGKQNTEPALEKPATAVTSPNDSKTKRECNHDSERTKKHKLVQPNTSSN
QAREGDSKRSGVTTTKTWGSWAQALYELAMHPENYKNSDSLLEISDDFVVLNDLYPKAKR
HVLVVSRKDGLDSLADVKKEHLPLLRRMHSAGVKWAQKFLEEDSSLVFRLGYHSVPSMRQ
LHLHIISQDFNSASLKNKKHWNSFTTTFFLDSVDVIEEIDQRGSATISSDDRVLAMELRC
HRCRSAHPNIPKLKSHIASCKSSFPSHLLQKDRLLSSSTMHMDCT
NT seq
2298 nt
NT seq
+upstream
nt +downstream
nt
atggatcccgacgccggcggctccaccgccgctccgctgccaccggcatcaaccgcaggc
gcgtcggcggcgtcggcgacggtggcggaggaaggcgggggcaagcaggtgatggtggtc
cttgtgggtccccccggcagcggcaagtccaccttcgccgaggccgtcctaggcggctcc
gccgccggccgcacctgggctcgcgtctgccaggatacaattggaaatggcaaagctggg
acgaaaatccagtgcttgaaggctgcagcagatgctctgaaggagggcaagagtgttctc
cttgaccgttgcaacttggaacgtgaacagcgcgctgactttatgaagcttggcagccat
gtacatgtggatgtgcatgccgttgtcttggatctccctgcaaaggtttgtatatcgcgc
tcagtaagccggacgggccatgaaggaaacctgcaaggtgggagggctgccatggttgtg
aaccgcatgctgaagaacaaggaaacaccattgctgactgaaggtttcagtcgaatcatg
ttctgtaaggataacaacgaaattaaaaaggctgttgacatgtatagtgcattagggcct
tcagatagtcttgattctggagttttcggtcagaatagcaaagggcctgtacaagttggc
ataatgaaatttctaaagaaaccaggaagctctgctgaaaaatccggtggacataaggtt
acaccgaatgaaagcataccgcaaatgcaaaatcatatttcagaacagcagaaccttgaa
gttggtggtacctgcacagtggaatctgtaaaggagttgagcaatagcaagaaaattgaa
gaccaaagtagagagagtgttctgtctgatatcagttcgcgcactctggcatttccatca
atttctactgctgactttcagtttgatcttgatagagcatcagacattatagtagatgca
gtggctgacatcttgcagaaatatgataatataagactagttcttgtagacctaagccat
aaatcaagaatactgtcattggtcaaggaaaaggctgctaagaagaacattaactccagc
aggtttttcacttttgtgggagatataactcagctgcaatcaaaaggaggccttcgatgc
aatgtgattgccaatgctgccaactggaggttaaaacctggaggtggaggggttaatgca
gcaatatacaatgccgctggggaagatttacaacgtgcaaccaaagaatgcgcggacaca
ttgagacctgggagctctgttgctgtcccacttccatcaacttctcctctgcatcaaagg
gaaggtgtgacccatatcatacatgtgcttgggccaaacatgaacccaatgcgaccggat
tgtctgaagaatgactatacaaaaggttctaagattctccatgaggcatatacatcactt
tttgagaactttgtagccattgtccagagctgcatggggaagcagaacaccgagcctgct
ttagaaaagccagcaactgcagtgacatcacctaatgattcaaaaacgaagcgagagtgc
aaccatgattctgagaggaccaaaaaacacaagttggttcaacccaatacatcctcaaat
caggctagagagggagatagcaagaggagtggtgttaccactactaagacttggggatcc
tgggcccaagctctttatgagcttgcgatgcacccagaaaattacaagaactctgattct
ctcctagagatatctgatgacttcgttgttctgaacgacctctatcccaaggccaaaagg
catgttttggttgtatctaggaaggatggtcttgattctctagcagatgtcaagaaagaa
cacttacctttgctgaggagaatgcattctgctggagtgaaatgggcacagaagttccta
gaggaagattcatctttggtattcagactcggataccattcggttccatccatgaggcaa
ttgcacctgcacatcataagccaggacttcaactctgccagtttgaagaacaagaaacac
tggaactccttcaccacaacatttttccttgattctgttgatgtcattgaagaaatcgat
cagcgtggatcagcaactatcagcagtgacgacagggtgctcgcaatggagcttcgttgc
cacagatgcaggagtgcccatccaaatatcccaaagctcaaatcccacattgcaagctgt
aaatcgtccttcccctcccatcttctgcagaaagataggctgttgtcatcatcgacaatg
catatggattgcacttag
DBGET
integrated database retrieval system
