Oryza sativa japonica (Japanese rice): 4332589
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Entry
4332589 CDS
T01015
Name
(RefSeq) BRCT domain-containing protein At4g02110
KO
K10728
topoisomerase (DNA) II binding protein 1
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
4332589
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
osa03032
]
4332589
03400 DNA repair and recombination proteins [BR:
osa03400
]
4332589
DNA replication proteins [BR:
osa03032
]
Eukaryotic type
DNA Replication Initiation Factors
Other initiation factors
4332589
DNA repair and recombination proteins [BR:
osa03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-B complex
4332589
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
PTCB-BRCT
BRCT_2
RTT107_BRCT_5
PHD
Motif
Other DBs
NCBI-GeneID:
4332589
NCBI-ProteinID:
XP_015627825
UniProt:
A0A8J8Y4U4
Q10ML5
LinkDB
All DBs
Position
3:join(10806085..10806183,10806295..10806384,10806467..10806571,10806923..10807024,10808047..10808131,10808607..10808691,10808799..10808843,10809011..10811998,10812165..10812381,10812519..10813091)
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AA seq
1462 aa
AA seq
DB search
MASPISGSDDDDEHLFAGVRFFLVGFDPLSESQYRSEMVRRSGVDAGRFGSGCTHVIVCG
LVYDDPACVAARAEGKKVVTELWVEASLDRGMLADADRVMYWPVRDLNGIAGSESLRICL
TGYQRSDREDIMSMVSLMGAQFSKSLNPDVVTHLICYKFEGEKYEAAKKAKLKFNFNIKL
VNHRWLEDCLKCWKILPVDDYSKSSWELEIMEAQAKDSEDEEDVGQRSFRNKIVRSTLNP
KGSAGTSANPVVNAPIRSPTISSGNIGMVLEKQPNIPGEIRKAEDAVNRIHDVAVQGTPR
TRLAMSANTDFSTPSQIPFIHSDSRGDAAVRDLKNADQIQGNKHKDVGTKTLDVTSGASG
TPCSSKMVVSANHNVHSLNKTNFVEDHGDTDASKADLTTPSREILPANVLDSSNVARGRS
QEDYGATCTPDAAAGQSTINDNVTNNNIGLKSGNNASLNINNKSSLKPLEKSVLPEQYSA
NRIGPLQGADGSMMRSDSSISTARKGDKIIADLAGVQVLKGGENIQDENVLDGAYSQKKK
CSISPVLFKVQNGDTGKETGALNSPSANRLSDTSEPAIWSSVGTNPSEANNVDLGKQQSG
SSKSRSRTALKHGNLVDGIKLPEYSSSETNAQPPPKPKELLATSLSATVHDVKRCPDFSF
QNKDGDYAQDSGNALNQDGSPLMRKTENVLAKVRTSDISLHSSRKSKLVPSSGNGDTEMS
DALDIEKNKAAVASNCKPEKVVPDENIKADQLKDFPGTSNNVLRQTGYLKKVASRKGMKA
STKRPRSASKVVDEPVVDDGKTKTVVSESEPDKMIAHKHIGETAKDGPDSVNAAEHRTNS
SDKVLTDGASRISRRLQNVHTMKNDRHAASNLESSKMISEENTGIGITPKKFVSNATTEG
HQTNSPKMLPNTSMRNTFAKRSRVSDTKMTGESSADKTETVAGKSLFDDLFPSQNIDHPK
KLSSSASADGCGSLSCKNASPARVRNAVAKRKIKALEDKSDSKLGKIGGAIVSAAKAVAS
RGIEESSCNINKVSSDQNSVKTDGMRDVSGLFSSDTSVIDRSENLNNSKLRCSKRNKSLS
LDHEKENMQDNGTLSSKSNGRTAIMNSNLDANSMKHGANMFNEPNRIKGNGPGTLITPEP
TCFILSGHRQQRKDYRSILRCLKARVCRDSHHWSYQATHFIAPDPLKRTEKFFAAAAAGK
WILKTDYLTSCNEVGKLLDEEPFEWSGTGLNDGETISFEAPKKWRVLRQQMGHGAFYGMQ
IIVYGQLVSPSLDTVKRAVRSGDGTILATSPPYTRFLNSGVDFAVVSSAMPSADAWVQQF
ISHDIPCITADYLVEYVCKHGHPLDRHVLFNTNDLANKSLKKLLQNQQEVATDVLKPQED
GDPDDLSCSACGSTDRGEVMLICGNEDGSTGCGVGMHIDCCDPPLEAVPEHDWLCPQCEM
PKATKKSASRVASKSRVSKRKR
NT seq
4389 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcccatcagcggcagcgacgacgatgacgagcacctcttcgccggcgtccgc
ttcttcctcgtcgggttcgaccccctctcggagtcccagtatcggtcggagatggtgcgg
cgcagcggcgtggacgccgggaggttcggcagcgggtgcacccacgtcatcgtttgcggc
ctcgtctatgatgacccggcatgcgtggcggcgcgggcggaagggaaaaaggtcgtcacc
gagctttgggtggaagctagcttggatcggggaatgcttgccgatgccgatagggttatg
tattggccggtgcgagatttgaatggaatagcaggcagtgaatcattacgcatttgcttg
acgggctaccaaagaagtgaccgcgaagatataatgagcatggtttctttgatgggagcg
caattctccaaatctttgaatccagacgtagtcactcaccttatttgctataaatttgaa
ggtgagaagtatgaggctgctaaaaaggcgaagttgaagttcaactttaacatcaaactt
gttaatcaccggtggttggaagactgcttaaagtgttggaaaattcttccagtagatgat
tacagcaaaagtagttgggaactagagataatggaggcgcaagccaaggactcagaagat
gaagaagatgtaggccaaagatcatttagaaataagattgtcagatccactctgaaccca
aaaggtagcgcgggaacttctgccaaccctgttgtgaatgcaccaattcggtcaccgact
atttcgagtggtaatatagggatggttttggaaaaacagccgaacattcctggagagatc
aggaaagcagaagatgccgtcaacaggatacatgatgtcgcagtccaaggcactcctaga
actagattggcaatgtctgctaacactgattttagcacacccagtcagattccatttatt
catagtgatagtagaggggatgctgcagtaagagatttgaaaaatgcagatcagatccag
gggaataaacacaaagatgttggcacaaagacacttgatgttacatccggtgcatcaggc
actccatgctcaagcaagatggttgtttctgctaaccataacgtgcattccttaaacaag
acaaattttgtggaggatcatggcgacactgatgctagcaaagctgacttgaccacccca
tccagagaaattctgcctgcaaatgtacttgattcatctaatgttgccagagggcgaagt
caagaggattatggagccacatgtactcctgatgcagcagctggtcagtcaaccattaat
gacaatgtcaccaataataatattggtttgaagtcaggaaacaatgcttcgctcaacatc
aacaacaaaagttctttgaaacccttagagaagtcggtactgcctgaacaatattcagct
aaccgtataggaccacttcagggggctgatgggagcatgatgagatctgattctagtatc
tcgacagcacgtaagggagataaaataattgctgatctagctggcgtccaggttctgaaa
ggtggtgaaaatatacaggatgagaatgtactggatggtgcatattcccaaaaaaagaag
tgctccatttccccagttttgttcaaagtgcaaaatggagatacggggaaagaaactggt
gcgttgaactctccttctgcaaataggcttagtgacacatctgaaccagcaatttggtca
tctgtaggaacaaatccaagtgaagctaataatgttgatttgggaaagcaacagtctggc
tcatctaaatcaagatctaggactgcactcaagcatggtaatctggttgatggaatcaag
ctccctgaatattcttcaagtgagacaaatgcgcagcctccaccgaaaccaaaagaattg
ctcgccacaagcctttcagccactgttcacgatgtaaagagatgtccagatttctctttt
caaaacaaggatggtgattatgcacaagatagtggtaatgcattgaatcaagatggctcg
ccactgatgcgcaagacagaaaacgttcttgcaaaggtcagaacatctgacatatcttta
cacagttcaaggaaatcaaaacttgttccctcttctggaaatggtgatactgagatgtct
gatgcacttgatattgaaaaaaataaggcagcagtggcttcaaattgcaagcctgagaaa
gtggtacctgatgaaaatataaaagcagaccagcttaaagactttccaggtacttcaaac
aatgttctgcgccaaacaggttatttaaagaaagtagcatctcgtaaaggaatgaaagca
agcacaaagagacctcgtagtgctagcaaggtggttgatgagccagtagttgacgatggt
aagactaagacagtggtttctgagtcagagcctgataaaatgattgctcacaagcacatt
ggtgaaacagctaaagatggccctgatagtgtaaacgcagcagaacacagaacaaattct
tcagacaaagttcttacagatggagcgagtaggatttccagaagactgcagaatgttcac
accatgaaaaatgatagacatgcagcttccaacttggaatccagtaagatgatttctgag
gaaaatactggaattgggataacccctaagaagtttgtgagtaatgcaactactgaggga
catcaaacaaattcaccgaaaatgttacccaataccagtatgaggaatacatttgccaag
aggtctcgggtatctgacaccaaaatgactggtgaatcatcagctgataaaactgaaaca
gtggctggcaagtcactatttgatgacttatttccttcccaaaacattgatcaccctaaa
aagctttcaagtagtgcaagtgctgacggctgtggatcactatcctgtaagaatgcatcg
cctgccagagttaggaatgcagttgccaagaggaaaataaaagctctagaagacaagtca
gacagcaagcttggaaaaattggtggtgccattgtatctgcagctaaagctgtggcatca
aggggaattgaagaaagctcatgcaacatcaacaaagtaagttctgatcaaaattctgtg
aagaccgatggaatgagagatgtatctggattattttcgagtgatacttctgtgatagac
aggtcagaaaatctgaataactctaagttgagatgcagcaaaagaaataaatctctttct
ttagaccatgaaaaggagaatatgcaagacaatggtactctcagttctaaatccaatggt
agaactgctattatgaattccaacttagatgcaaattcgatgaagcacggtgcaaatatg
ttcaatgagcccaatagaataaaaggaaacggacctggcaccttgatcacgcctgagcct
acatgttttattttaagtggacatcgccaacagagaaaggactatagatcaatacttcgg
tgcctgaaggcacgagtttgcagggattcacatcattggtcataccaagcgacacatttt
attgccccagaccctctcaagagaactgaaaaattctttgcagctgcagcagctggcaag
tggatactgaaaactgattacttgacctcttgcaatgaggttggcaaattgttggacgaa
gaaccatttgaatggtctggtacaggccttaatgacggggaaacaatcagctttgaagct
cccaagaaatggcgtgttttgaggcagcagatgggccatggtgccttctatgggatgcag
ataattgtatatggacagctcgttagtccatcgctggatacagtaaagcgtgcagtacga
tctggcgatggcaccatcttagcaacctcgccaccgtacacacggttcttgaactctggc
gtcgacttcgctgtggtatcttcggccatgccaagtgcagacgcatgggttcaacaattc
atcagtcacgatattccttgtatcactgctgattatcttgttgagtacgtctgcaagcat
gggcatccgctcgacaggcatgttctcttcaacacaaacgatctggccaacaagtccctc
aagaaactactgcaaaaccagcaagaggtggccacagatgtactgaagccacaggaggac
ggagatcccgacgacctgagctgctcggcgtgcgggagtacggaccggggcgaggtgatg
ctcatctgcggcaacgaggatggctcgaccggctgcggtgtaggtatgcacatcgactgc
tgcgaccctcccctggaagctgtcccagaacatgactggctgtgcccccagtgcgaaatg
cccaaagcgacgaagaaatctgcgtcacgcgtagctagcaaatcgagagtatccaagcga
aaaaggtga
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integrated database retrieval system
