Oryza sativa japonica (Japanese rice): 4332623
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Entry
4332623 CDS
T01015
Symbol
phyB, PHYB1
Name
(RefSeq) phytochrome B
KO
K12121
phytochrome B
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
4332623 (phyB)
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GFIT
Motif
Pfam:
PHY
PAS
PAS_2
GAF
HATPase_c
HisKA
PAS_4
PAS_9
PAS_3
PAS_8
Motif
Other DBs
NCBI-GeneID:
4332623
NCBI-ProteinID:
NP_001389072
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All DBs
Position
3:join(11073750..11075940,11076339..11077146,11078264..11078557,11080895..11081117)
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AA seq
1171 aa
AA seq
DB search
MASGSRATPTRSPSSARPAAPRHQHHHSQSSGGSTSRAGGGGGGGGGGGGGAAAAESVSK
AVAQYTLDARLHAVFEQSGASGRSFDYTQSLRASPTPSSEQQIAAYLSRIQRGGHIQPFG
CTLAVADDSSFRLLAYSENTADLLDLSPHHSVPSLDSSAVPPPVSLGADARLLFAPSSAV
LLERAFAAREISLLNPLWIHSRVSSKPFYAILHRIDVGVVIDLEPARTEDPALSIAGAVQ
SQKLAVRAISRLQALPGGDVKLLCDTVVEYVRELTGYDRVMVYRFHEDEHGEVVAESRRN
NLEPYIGLHYPATDIPQASRFLFRQNRVRMIADCHAAPVRVIQDPALTQPLCLVGSTLRS
PHGCHAQYMANMGSIASLVMAVIISSGGDDDHNISRGSIPSAMKLWGLVVCHHTSPRCIP
FPLRYACEFLMQAFGLQLNMELQLAHQLSEKHILRTQTLLCDMLLRDSPTGIVTQSPSIM
DLVKCDGAALYYHGKYYPLGVTPTEVQIKDIIEWLTMCHGDSTGLSTDSLADAGYPGAAA
LGDAVSGMAVAYITPSDYLFWFRSHTAKEIKWGGAKHHPEDKDDGQRMHPRSSFKAFLEV
VKSRSLPWENAEMDAIHSLQLILRDSFRDSAEGTSNSKAIVNGQVQLGELELRGIDELSS
VAREMVRLIETATVPIFAVDTDGCINGWNAKVAELTGLSVEEAMGKSLVNDLIFKESEET
VNKLLSRALRGDEDKNVEIKLKTFGPEQSKGPIFVIVNACSSRDYTKNIVGVCFVGQDVT
GQKVVMDKFINIQGDYKAIVHNPNPLIPPIFASDENTCCSEWNTAMEKLTGWSRGEVVGK
LLVGEVFGNCCRLKGPDALTKFMIVLHNAIGGQDCEKFPFSFFDKNGKYVQALLTANTRS
RMDGEAIGAFCFLQIASPELQQAFEIQRHHEKKCYARMKELAYIYQEIKNPLNGIRFTNS
LLEMTDLKDDQRQFLETSTACEKQMSKIVKDASLQSIEDGSLVLEKGEFSLGSVMNAVVS
QVMIQLRERDLQLIRDIPDEIKEASAYGDQYRIQQVLCDFLLSMVRFAPAENGWVEIQVR
PNIKQNSDGTDTMLFLFRFACPGEGLPPEIVQDMFSNSRWTTQEGIGLSICRKILKLMGG
EVQYIRESERSFFHIVLELPQPQQAASRGTS
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggcctcgggtagccgcgccacgcccacgcgctccccctcctccgcgcggcccgcggcg
ccgcggcaccagcaccaccactcgcagtcctcgggcgggagcacgtcccgcgcgggaggg
ggtggcgggggcgggggagggggagggggcggcgcggccgccgcggagtcggtgtccaag
gccgtggcgcagtacaccctggacgcgcgcctccacgccgtgttcgagcagtcgggcgcg
tcgggccgcagcttcgactacacgcagtcgctgcgtgcgtcgcccaccccgtcctccgag
cagcagatcgccgcctacctctcccgcatccagcgcggcgggcacatacagcccttcggc
tgcacgctcgccgtcgccgacgactcctccttccgcctcctcgcctactccgagaacacc
gccgacctgctcgacctgtcgccccaccactccgtcccctcgctcgactcctccgcggtg
cctccccccgtctcgctcggcgcagacgcgcgcctccttttcgccccctcgtccgccgtc
ctcctcgagcgcgccttcgccgcgcgcgagatctcgctgctcaacccgctctggatccac
tccagggtctcctctaaacccttctacgccatcctccaccgcatcgatgtcggcgtcgtc
atcgacctcgagcccgcccgcaccgaggatcctgcactctccatcgctggcgcagtccag
tctcagaagctcgcggtccgtgccatctcccgcctccaggcgcttcccggcggtgacgtc
aagctcctttgcgacaccgttgttgagtatgttagagagctcacaggttatgaccgcgtt
atggtgtacaggttccatgaggatgagcatggagaagtcgttgccgagagccggcgcaat
aaccttgagccctacatcgggttgcattatcctgctacagatatcccacaggcatcacgc
ttcctgttccggcagaaccgtgtgcggatgattgctgattgccatgctgcgccggtgagg
gtcatccaggatcctgcactaacacagccgctgtgcttggttgggtccacgctgcgttcg
ccgcatggttgccatgcgcagtatatggcgaacatgggttccattgcatctcttgttatg
gcagtgatcattagtagtggtggggatgatgatcataacatttcacggggcagcatcccg
tcggcgatgaagttgtgggggttggtagtatgccaccacacatctccacggtgcatccct
ttcccactacggtatgcatgcgagttcctcatgcaagcctttgggttgcagctcaacatg
gagttgcagcttgcacaccaactgtcagagaaacacattctgcggacgcagacactgctg
tgtgatatgctactccgggattcaccaactggcattgtcacacaaagccccagcatcatg
gaccttgtgaagtgtgatggtgctgctctgtattaccatgggaagtactaccctcttggt
gtcactcccacagaagttcagattaaggacatcatcgagtggttgactatgtgccatgga
gactccacagggctcagcacagatagccttgctgatgcaggctaccctggtgctgctgca
ctaggagatgcagtgagtggaatggcggtagcatatatcacgccaagtgattatttgttt
tggttccggtcacacacagctaaggagataaagtggggtggtgcaaagcatcatccagag
gataaggatgatggacaacgaatgcatccacgatcatcgttcaaggcatttcttgaagtt
gtgaagagtaggagcttaccatgggagaatgcggagatggatgcaatacattccttgcag
ctcatattgcgggactctttcagagattctgcagagggcacaagtaactcaaaagccata
gtgaatggccaggttcagcttggggagctagaattacggggaatagatgagcttagctcg
gtagcaagggagatggttcggttgatcgagacagcaacagtacccatctttgcagtagat
actgatggatgtataaatggttggaatgcaaaggttgctgagctgacaggcctctctgtt
gaggaagcaatgggcaaatcattggtaaatgatctcatcttcaaggaatctgaggaaaca
gtaaacaagctactctcacgagctttaagaggtgatgaagacaaaaatgtagagataaag
ttgaagacattcgggccagaacaatctaaaggaccaatattcgttattgtgaatgcttgt
tctagcagggattacactaaaaatattgttggtgtttgttttgttggccaagatgtcaca
ggacaaaaggtggtcatggataaatttatcaacatacaaggggattacaaggctatcgta
cacaaccctaatcctctcatacccccaatatttgcttcagatgagaatacttgttgttcg
gagtggaacacagcaatggaaaaactcacaggatggtcaagaggggaagttgttggtaag
cttctggtcggtgaggtctttggtaattgttgtcgactcaagggcccagatgcattaacg
aaattcatgattgtcctacacaacgctataggaggacaggattgtgaaaagttccccttt
tcattttttgacaagaatgggaaatacgtgcaggccttattgactgcaaacacgaggagc
agaatggatggtgaggccataggagccttctgtttcttgcagattgcaagtcctgaatta
cagcaagcctttgagattcagagacaccatgaaaagaagtgttatgcaaggatgaaggaa
ttggcttacatttaccaggaaataaagaatcctctcaacggtatccgatttacaaactcg
ttattggagatgactgatctaaaggatgaccagaggcagtttcttgaaaccagcactgct
tgtgagaaacagatgtccaaaattgttaaggatgctagcctccaaagtattgaggatggc
tctttggtgcttgagaaaggtgaattttcactaggtagtgttatgaatgctgttgtcagc
caagtgatgatacagttgagagaaagagatttacaacttattcgagatatccctgatgaa
attaaagaagcctcagcatatggtgaccaatatagaattcaacaagttttatgtgacttt
ttgctaagcatggtgaggtttgctccagctgaaaatggctgggtggagatacaggtcaga
ccaaatataaaacaaaattctgatggaacagacacaatgcttttcctcttcaggtttgcc
tgtcctggcgaaggccttcccccagagattgttcaagacatgtttagtaactcccgctgg
acaacccaagagggtattggcctaagcatatgcaggaagatcctaaaattgatgggtggc
gaggtccaatatataagggagtcggagcggagtttcttccatatcgtacttgagctgccc
cagcctcagcaagcagcaagtagggggacaagctga
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