Oryza sativa japonica (Japanese rice): 4332645
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Entry
4332645 CDS
T01015
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH3 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4332645
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4332645
03009 Ribosome biogenesis [BR:
osa03009
]
4332645
Enzymes [BR:
osa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
4332645
Spliceosome [BR:
osa03041
]
Complex A
U2 snRNP components
U2 related factors
4332645
Complex B
4332645
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
4332645
Ribosome biogenesis [BR:
osa03009
]
Eukaryotic type
90S particles
Helicases
4332645
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
ResIII
ABC_tran
nSTAND3
SRP54
Cas3-like_C_2
T2SSE
AAA_30
AAA_7
AAA_29
TrwB_AAD_bind
Motif
Other DBs
NCBI-GeneID:
4332645
NCBI-ProteinID:
XP_015631016
UniProt:
Q10MC7
LinkDB
All DBs
Position
3:join(11291381..11291671,11291982..11292169,11292313..11293397,11293775..11293900,11293979..11294217,11294300..11294418,11294506..11294626)
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AA seq
722 aa
AA seq
DB search
MGTERKRKVSLFDVVDETSVSAKLGRAATTNGSAAAAAANPSINRWTGRPYSARYLEILE
KRRTLPVWQQKDDFLAVLRDNQTLILVGETGSGKTTQIPQFVLEAEGLSNRSMVACTQPR
RVAAMSVSRRVAEEMDVTIGEEVGYSIRFEDCSSHKTVLKYLTDGMLLREAMADPLLERY
KVIVLDEAHERTLATDVLFGLLKEVLKNRPDLKLVVMSATLEAEKFQTYFSGAPLMKVPG
RLHPVEIFYTQEPERDYLEAAIRTVVQIHMCEPAGDILVFLTGEEEIEDACRKINKEINN
MGDQVGPVKVVPLYSTLPPAMQQKIFEPAPAPSREGGPAGRKIVVSTNIAETSLTIDGIV
YVIDPGFSKQKVYNPRIRVESLLVSPISKASAHQRAGRAGRTQPGKCFRLYTEKSFNDDL
QPQTYPEILRSNLANTVLTLKKLGIDDLVHFDFMDPPAPETLMRALEVLNYLGALDDDGN
LTPLGETMSEFPLDPQMSKMLVISPKYNCSNEILSISAMLSVPNCFLRPREAQKAADEAK
ARFGHIDGDHLTLLNVYHAYKQNNEDPQWCYENFINARALKSADNVRQQLVRIMTRFNLK
MCSTDFNSREYYVNIRKAMLAGYFMQVAHLERTGHYLTVKDNQVVHLHPSNCLDHKPEWV
IYNEYVLTTRNFIRTVMDIRGDWLIDVAPHYYDLSNFPSCEAKRVLERLYNKRERERAAN
RN
NT seq
2169 nt
NT seq
+upstream
nt +downstream
nt
atggggacggagcggaagcgcaaggtgagcctcttcgacgtggtcgacgagacctccgtc
tccgccaagctcggccgcgccgccaccaccaacggctcggccgccgccgccgcggccaac
ccgtccatcaatcggtggacggggaggccctactcggcgaggtacctcgagatcctcgag
aagcgccgcacgctacccgtgtggcagcagaaggacgatttcctcgccgtcctccgcgac
aaccagaccctcatcctcgtcggagaaaccggaagcggcaagaccactcagattccccaa
ttcgtgctcgaggctgaaggcttgagcaaccgctcaatggttgcttgcacccagccgcgg
agggtggcagctatgtcagtttcccggcgtgttgcggaggagatggatgttactatcggg
gaggaagttggttacagcatccgttttgaggattgcagcagtcacaaaacagttctcaaa
tatttgacagatggtatgcttctgagagaagctatggcagacccacttttagagaggtac
aaggtgattgttcttgatgaggcccatgagcggacattagcaacagatgttctgtttggg
cttctgaaggaggttctaaagaacagacctgatttgaagcttgttgttatgagtgctacc
cttgaggctgagaaatttcagacctatttcagtggtgcaccgttgatgaaggtgcctggg
agacttcatccggttgagatcttctatacacaagaaccagaaagggactacctggaagct
gctatcaggacagttgttcagatacatatgtgtgaacctgctggagatatccttgttttc
cttactggagaggaggagattgaggatgcctgtcggaagataaataaggaaattaataac
atgggggatcaggttggcccagttaaagttgtgcctttgtattctacgctgcctccagca
atgcagcagaagatttttgaacctgctccagccccatcaagagagggaggcccagctgga
aggaaaattgttgtgtccacaaatattgctgagacatccctaaccatagatggtatagtg
tatgtgatagacccagggttttccaaacagaaggtttacaatccaaggataagggtggag
tcccttctggtgtcgccaatttcaaaggcaagtgcacatcagagagctggtcgtgctgga
agaacgcaacctgggaagtgtttcaggttatatacagagaagagttttaacgatgattta
cagccacagacatacccagaaattcttaggtcaaatctggcgaatacggttcttaccttg
aagaagcttggaattgatgatttagtgcattttgactttatggatcctcctgcaccagaa
actttgatgagggccttggaagttttgaactacttaggggcacttgatgatgatggaaac
ctcacgcctttaggtgaaacaatgagtgaatttcctctagatccccagatgtcaaagatg
cttgtcatcagtccaaaatacaactgttcaaatgagatcctttcaatatctgccatgctg
tcagtacccaattgctttctccggcctagggaggcacagaaggctgctgatgaagcgaag
gctcgatttggccacattgacggggaccacctgacacttctgaatgtataccatgcatac
aagcagaacaatgaagatccccagtggtgttatgagaacttcatcaatgccagagctcta
aagtcagctgataatgtcagacaacagcttgttcgcatcatgaccagatttaacctcaag
atgtgcagcacagacttcaatagtcgggagtactacgtcaatatcaggaaagccatgctt
gcagggtacttcatgcaggttgctcacctggagcgaacaggacattacctgaccgtcaaa
gataaccaggttgtccatcttcacccctcgaactgtctagaccataagccggagtgggtc
atctacaatgagtatgttttgaccaccagaaatttcatccgcacggtcatggatatccgt
ggtgattggctgattgatgtggctccacactattatgatcttagtaatttcccctcgtgc
gaggcaaagcgcgtccttgagaggctgtacaacaagcgggagagggaaagagctgctaat
aggaactga
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integrated database retrieval system
