Oryza sativa japonica (Japanese rice): 4332779
Help
Entry
4332779 CDS
T01015
Name
(RefSeq) putative tRNA pseudouridine synthase
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
osa
Oryza sativa japonica (Japanese rice)
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
osa03016
]
4332779
Enzymes [BR:
osa01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
4332779
Transfer RNA biogenesis [BR:
osa03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
4332779
Prokaryotic type
4332779
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
4332779
NCBI-ProteinID:
XP_015627884
UniProt:
Q10LR0
Q0DS18
LinkDB
All DBs
Position
3:complement(join(12647160..12647591,12648008..12648424,12649243..12649387,12649484..12649632,12649746..12649858,12650333..12650368,12650468..12650726))
Genome browser
AA seq
516 aa
AA seq
DB search
MAAAAAATWRLWRPYSSALLSRRVNPRFLRTTPCVSYPGGAAASAAPPSPPLATTCSDDW
GGGMRWESARKKRVVLRVGYVGTEYRGLQKQRELSADSTIESVLETAIFKAGGILESNYG
KLQKVGWERSSRTDKGVHSLATMISLKMEIPDRAWENDPDGIALSNFINSNLPDNVRVFS
VLPAQRSFDVRRECLYREYLYLLPAEIIGIKGGCSSEEVMEHLSEFNSILKGFEGNHPFH
NYTARAKYRKVLAGRHRKVKGASSAVNSMPTEMSLDQSSSDDGTTSDHDEEDLNSSSIIG
SSVPEDSYKDNPEFSEKQVQIRARWLHEPDENDRLNASHFRDILTFSCGELQISSGIQFV
ELTISGVSFMLHQIRKMVGTSVAVKRGLLPKDIIALSLAKFSRIVLPIAPSEVLVLRDNS
FCLRNKQGTIVRPGIQSMNESEEVKKGVMEFYRAALVPELANFLDASMPPWKEWVENLDR
FTSIPDPQLEEVRSAYRVWKADYDRVKMARKSASSD
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
atggccgccgccgccgcggcgacgtggcgcctctggaggccctactcctccgctctcctc
tctcgccgggtgaacccgaggttcctccgtactacgccgtgcgtctcctaccccggcggc
gccgcggcttctgcggcgccaccctcgcctccgcttgccaccacctgctccgacgattgg
ggcggcgggatgaggtgggagtccgcgcggaagaagagggtcgtgctccgcgtaggctac
gtcggcacggagtaccgaggtcttcagaagcagcgggagctcagcgcggactcgacaatt
gagtcagtcttggaaacagccatcttcaaggctgggggcattcttgagagtaattatggg
aagctgcaaaaagttggctgggaaaggagtagtagaactgataaaggggtacattcactg
gccacaatgatctctctgaaaatggaaatccctgatcgagcatgggagaatgatcctgat
ggcattgctctttcaaacttcattaactcaaatttgccagacaatgttagagttttcagt
gttttgcctgctcaaaggagtttcgatgtgaggagggaatgcttgtatcgggaatacttg
tatcttcttcctgctgaaataattggaattaaaggtggttgtagctctgaagaagtaatg
gaacacctgtcagaattcaatagcattctgaaaggttttgagggaaaccatccatttcat
aattacactgctcgtgccaagtataggaaagttctagcaggaaggcatcgtaaggtaaaa
ggggcaagctcagctgtaaattccatgcccactgaaatgagtttggaccaaagctcctct
gatgacggaactacttcagaccatgatgaagaagacttgaactcttcgtcgataattggt
tctagtgtaccagaagacagttataaggataatcccgaattttctgagaagcaggttcag
attcgagctaggtggcttcatgagcctgatgaaaatgatcgactgaatgcttcacatttc
agagatatcctcacattctcctgtggagagctccagatttcatcaggaattcaatttgtg
gaattgactatatcaggagtatctttcatgctgcatcagatccggaagatggttggtact
tcggtggcggttaagcgtggattactacccaaagatattatagcactgtctcttgcaaag
ttttctcgcattgtgttaccaattgccccttctgaagttttggtgcttagagataacagt
ttctgcctgaggaacaagcaagggactatagttcgccctgggatccaatcaatgaatgaa
tctgaagaagtcaagaagggggtaatggaattctacagggcagctcttgttccagagcta
gcaaacttcctggatgcatccatgcctccatggaaagaatgggtggagaacttggaccga
ttcacgagcataccagatccacagctggaggaagttaggagcgcttatagggtgtggaaa
gcggactacgaccgagtaaaaatggccagaaagagtgccagcagcgactaa
DBGET
integrated database retrieval system
