Oryza sativa japonica (Japanese rice): 4332861
Help
Entry
4332861 CDS
T01015
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein PRP4-like protein
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4332861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
osa03041
]
4332861
Spliceosome [BR:
osa03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
4332861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR5
WD40_Prp19
WD40
Beta-prop_WDR3_1st
Beta-prop_THOC3
Beta-prop_WDR3_2nd
WD40_CDC20-Fz
WD40_Gbeta
Beta-prop_EML_2
WD40_WDHD1_1st
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR36-Utp21_1st
Beta-prop_EML
NBCH_WD40
Beta-prop_TEP1_C
ANAPC4_WD40
Beta-prop_Aladin
Beta-prop_WDR75_1st
PRP4
Beta-prop_DCAF4
Beta-prop_IFT122_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_RIG_2nd
Beta-prop_Vps41
Beta-prop_WDR19_1st
WD_LRWD1
Beta-prop_SCAP
Beta-prop_Nup120_160
Beta-prop_WDR75_2nd
Beta-prop_NWD2_C
LCE
WD40_like
Tricorn_2nd
Beta-prop_NUP159_NUP214
Beta-prop_ACSF4
Motif
Other DBs
NCBI-GeneID:
4332861
NCBI-ProteinID:
XP_015633281
UniProt:
Q10LA2
LinkDB
All DBs
Position
3:join(13881426..13882171,13883308..13883761,13883922..13884119,13884197..13884278,13884967..13885061)
Genome browser
AA seq
524 aa
AA seq
DB search
MENPRPQAPAGTPPMAPLPVPPPIAPIPAPPPRAPAPAPAAAAAVASTSAAGGGGGGGGE
ADYEVSDDHRAARERHERAVQELLQRRRAFAMAVPTNDSAVRARLRRLGEPVTLFGEREM
ERRDRLRALMVRLEADGHLDRLLRAQEEEQGAAGAEEEEEQIQYPFFTEGTQELLKARVD
IAQYSLPRAKARIERAKRCHDDPDEDPEAEANLVVKQAEDFVLECSEIGDDRPLTGCSFS
RDFSMLATSSWSGMIKVWSMPQVTKIATLKGHTERATDVAFSPVDDCLATASADKTAKLW
KTDGSLLLSFDGHLDRLARLAFHPSGGYLATASFDKTWRLWDVSTGKELLLQEGHSRSVY
GVSFHPDGSLAASCGLDAYARVWDLRSGRLWGTLMGHVKPVLGVSFSPNGYLVATGSEDN
FCRIWDLRTKRMLYSIPAHKSLISHVKFEPQEGYYLATSSYDTKAALWSARDYKPIKSLV
AHESKVTSLDISGDGQQIVTVSHDRTIKIWSCRSRAQDNAMELD
NT seq
1575 nt
NT seq
+upstream
nt +downstream
nt
atggagaaccccaggccacaggctcctgcggggacccctcccatggctcccctccccgtg
cccccgcccatcgcccccatccctgccccgcctccgcgagccccagcacccgccccggcc
gccgccgccgccgtcgcctcgacctccgcggcgggaggaggcggcgggggcggcggtgag
gctgactacgaggtctccgatgaccaccgcgccgcgcgggagcgccacgagcgcgcggtg
caggagctgctccagcgccgccgcgccttcgccatggccgtgcccaccaacgactccgcc
gtgcgggcgcgcctccgccgcctcggcgagcccgtcacgctcttcggcgagcgcgagatg
gagcgccgggaccgcctccgcgctctcatggtccgcctcgaggccgacggccacctcgac
cgcctcctccgcgcgcaggaggaggagcagggcgccgcgggcgccgaagaggaggaggag
cagatccagtaccccttcttcaccgagggcacgcaggagcttctcaaggcgcgcgtcgac
atcgcgcagtactcgctgccccgagccaaggccaggatagagcgggccaagcgctgccat
gacgaccccgacgaggaccctgaggcagaggccaaccttgtcgttaagcaggcggaggat
ttcgtgcttgagtgcagcgagattggagatgaccgccccctcaccggctgctccttctct
cgagatttttcaatgctcgctacaagttcatggagtgggatgatcaaagtgtggagtatg
ccacaagtaactaaaattgcaactctgaaaggtcacacagaacgtgcaactgatgttgcg
ttttcaccagttgacgactgcttagcaacagcttcagctgataaaactgccaaactatgg
aagaccgatgggtcactcttattgtcctttgatggtcacctcgatcggcttgctcgcctt
gcttttcatccatctggagggtaccttgctacagctagctttgacaaaacctggagattg
tgggacgttagcactggaaaggaacttctactccaagaagggcacagcagaagtgtctat
ggagttagctttcacccagatggttctttagctgcatcttgtggtcttgatgcgtatgct
cgagtttgggatttaagatcaggaagattgtggggcacactcatgggacatgtgaagcct
gtcttaggagtgagcttctcccctaatggttatctggttgcaactggaagtgaagacaat
ttctgtcgaatatgggatttgaggactaaaagaatgttatattctataccagcacataag
agtcttatctcacatgtcaagtttgaaccccaggaaggctattatttggcaacttcgtcc
tatgacaccaaagcagcactgtggtcagctcgtgattacaaaccaatcaagagtttggtg
gcccatgagtcaaaggttactagtttggatattagtggagatggacagcagattgtgact
gtgtcacatgatagaacgatcaagatttggtcctgcagaagcagggcacaagataatgcc
atggagctggactga
DBGET
integrated database retrieval system
