Oryza sativa japonica (Japanese rice): 4332988
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Entry
4332988 CDS
T01015
Name
(RefSeq) uncharacterized protein
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
osa
Oryza sativa japonica (Japanese rice)
Pathway
osa03013
Nucleocytoplasmic transport
osa03015
mRNA surveillance pathway
osa03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
osa00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
4332988
09122 Translation
03013 Nucleocytoplasmic transport
4332988
03015 mRNA surveillance pathway
4332988
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
osa03019
]
4332988
03041 Spliceosome [BR:
osa03041
]
4332988
Messenger RNA biogenesis [BR:
osa03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
4332988
Spliceosome [BR:
osa03041
]
Complex C
Other components
EJC/TREX
4332988
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
4332988
NCBI-ProteinID:
XP_015631513
UniProt:
Q10KI0
LinkDB
All DBs
Position
3:complement(join(15566407..15566871,15567337..15567488,15567579..15567776,15568577..15569909))
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AA seq
715 aa
AA seq
DB search
MSSYPVLNNRPIDQWRVTDLKDELRKRRLPVKGLKDELVRRLFESIQSEKEEEEEEQDNE
TVEVNPAANQASEIQSVSQETTVSITEVHKETVVQVTQEATPPITEVSQSLTVSAAEEPP
KVNAVATHEAPLSKAPTDKGEEPPIAGDVSTVENEHLHAENNTEPFVEKTQDVGTNEAIG
ALDMTSADVESDMTSSDIKIDATEASKVQQHDTVATTVDAIPTDADPMDTDVATEKAVLN
DLGDTTSVYDEERKDSELTNEDEKPIAPKPNDQVPEVSPDLGSPIKCESISSDDISTNKK
NNIKDNLNANNFDLELEAKPEMVKPSSGITSIGGDLQPLDDDKDLGKNQSSLEYIDSTAN
VDEGGSPEKLNLDRSSGDESMEEDVMEIKQVESNIKSEGTAELSSDHVKEVSLPDTVVDN
SSVDTKEVIADEKTAASTEKRKLEAEETVAATEPIKRQRRWAADGAKVPERQPISHSGSD
APKENFQPALKRSFGRSDSTASGDSPKERVVPPSQKPATASLRIDRFVRPFTLKAVQELL
GKTGSLCSFWMDHIKTHCYVTFSSVEEAVATRDAVYDLQWPPNNGNRLVAEFVDPQEVKL
KLEPPPPAAAPISPATTPKEPPFQQAQANQNMPRQAAAPREHLPPPPPLTTLPTSDSGSA
KERLPPTPKKQPEPPVVTLDDLFRKTHSSPRIYYLPLSEEEVAAKLASQGKGKRE
NT seq
2148 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcataccctgtgctaaacaacagacctattgatcaatggagagttactgatctg
aaggatgaacttcgtaagaggaggctccctgttaaaggcttgaaagatgaacttgtaagg
cgactcttcgagtcaattcagagtgaaaaagaagaagaagaagaagaacaagataatgaa
actgtcgaagtgaatccagcagctaaccaggcatctgaaatacagagtgtttctcaggaa
actacagtttctattacagaagttcacaaggaaactgtggttcaagtaactcaggaagct
acacctcctatcactgaagtaagtcagtcgctcacagtttcagctgccgaagagcccccc
aaggttaacgcggtggcaacccatgaagctcccttaagcaaggccccaacagacaaagga
gaagagccaccaattgcaggagatgtttccacagtggaaaacgaacatcttcatgctgaa
aataatactgaaccttttgttgagaagacacaagatgttggcaccaacgaagcaattggt
gcccttgatatgaccagtgctgatgtagagtcagacatgacctcttctgatatcaagata
gatgctactgaagccagcaaagttcaacaacatgacacagtagcaacaactgtggatgcc
atcccaacagatgctgatcctatggatactgatgttgcaactgagaaggcggttcttaat
gatttgggtgacactacttcagtgtatgatgaagagcgcaaagattctgagctcacgaat
gaggacgagaagcccatcgcaccaaaaccaaatgatcaggtacctgaggttagcccagat
ttagggtctccaattaagtgtgagtcaatttctagcgatgatatatcaactaacaaaaag
aataatataaaggataatttgaatgctaataattttgatttagaactagaggctaagcca
gagatggtaaaaccatcttctggcattacttccataggtggagatttgcagccattggat
gatgacaaagatctgggtaaaaaccagtcatctttggaatacatagattccacagctaat
gtggatgaaggcggctctccagagaaactaaatttagacaggagttcaggtgatgagtca
atggaggaggatgtcatggagattaagcaagttgagtccaacattaaatctgaaggaaca
gctgagcttagctcagatcatgtgaaagaggtgtccctccctgatactgttgtggacaat
tcctctgttgacacgaaagaagttatagctgatgaaaagacagcagcttcaactgaaaag
aggaaactcgaagctgaagaaactgttgctgccactgagccaatcaaacgccagcgtcga
tgggctgcagatggtgccaaagttccagagagacaaccaataagtcatagtggctctgat
gctcctaaggaaaattttcagcctgctttaaaacgatcttttggcaggtctgattcaaca
gctagtggagattccccaaaggagcgggttgtgccaccatctcagaaacctgcaacagct
tccttgagaattgatcgatttgtaaggccatttacgctgaaggctgtgcaagaacttctt
ggtaaaactggatctctttgtagtttctggatggatcacatcaagacccactgctatgtt
acgttttcatcagtagaggaagctgtggctactcgggatgctgtctacgatttgcagtgg
ccaccaaacaacggcaatcgtttggttgctgaatttgttgatccccaggaagtgaagctc
aaacttgaacctcctccgccagcggcggctcctattagccctgctactacaccaaaggag
ccaccctttcaacaggctcaggctaatcaaaacatgcctcgtcaagccgctgcaccaagg
gagcacttgccacctccaccgcctcttactacgcttcctacatctgactcaggatcagca
aaggagaggcttccacccaccccaaagaaacagccggaacctcctgttgtgacactcgat
gatctcttcaggaagacacattcttctcctaggatttattaccttcctttatcagaagag
gaagtggcagccaagcttgcttcacagggcaaaggcaagagagaatga
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