KEGG   Oryza sativa japonica (Japanese rice): 4333273
Entry
4333273           CDS       T01015                                 
Symbol
eIF4A-III, EIF4A3, EIF4A3B, OsRH34, RH34
Name
(RefSeq) eukaryotic initiation factor 4A-III homolog B
  KO
K13025  ATP-dependent RNA helicase [EC:5.6.2.7]
Organism
osa  Oryza sativa japonica (Japanese rice)
Pathway
osa03013  Nucleocytoplasmic transport
osa03015  mRNA surveillance pathway
osa03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:osa00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    4333273 (eIF4A-III)
  09122 Translation
   03013 Nucleocytoplasmic transport
    4333273 (eIF4A-III)
   03015 mRNA surveillance pathway
    4333273 (eIF4A-III)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:osa03019]
    4333273 (eIF4A-III)
   03041 Spliceosome [BR:osa03041]
    4333273 (eIF4A-III)
   03009 Ribosome biogenesis [BR:osa03009]
    4333273 (eIF4A-III)
   03012 Translation factors [BR:osa03012]
    4333273 (eIF4A-III)
Enzymes [BR:osa01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     4333273 (eIF4A-III)
Messenger RNA biogenesis [BR:osa03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     4333273 (eIF4A-III)
   mRNA cycle factors
    Stress granule specific factors
     4333273 (eIF4A-III)
Spliceosome [BR:osa03041]
 Complex C
  Other components
   EJC/TREX
    4333273 (eIF4A-III)
Ribosome biogenesis [BR:osa03009]
 Eukaryotic type
  90S particles
   Helicases
    4333273 (eIF4A-III)
Translation factors [BR:osa03012]
 Eukaryotic type
  Initiation factors
   eIF-4
    4333273 (eIF4A-III)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII AAA_19 Cas3-like_C_2 AAA_30 AAA_22 AAA
Other DBs
NCBI-GeneID: 4333273
NCBI-ProteinID: NP_001405269
LinkDB
Position
3:complement(join(21350240..21350353,21350981..21351067,21351146..21351313,21352052..21352171,21352279..21352386,21353096..21353176,21353259..21353499,21354053..21354348))
AA seq 404 aa
MAAATTSRRGPGAMDDENLTFETSPGVEVISSFDQMGIREDLLRGIYAYGFEKPSAIQQR
AVLPIISGRDVIAQAQSGTGKTSMISLSVCQIVDTAVREVQALILSPTRELAAQTERVML
AIGDYINIQVHACIGGKSIGEDIRKLEHGVHVVSGTPGRVCDMIKRRTLRTRAIKLLILD
EADEMLGRGFKDQIYDVYRYLPPELQVCLISATLPHEILEMTSKFMTDPVRILVKRDELT
LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTERMRSNNFTVSAM
HGDMPQKERDAIMGEFRSGATRVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIGR
SGRFGRKGVAINFVKKEDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq 1215 nt   +upstreamnt  +downstreamnt
atggcggcggccaccacgtcccggcgcggccccggcgccatggacgacgagaacctcacc
ttcgagacctcccccggggtcgaggtcatcagcagcttcgaccagatggggatccgcgag
gacctcctccgcggcatctacgcctacggcttcgagaagccctccgccatccagcagcgc
gccgtcctccccatcatcagcggccgcgacgtcatcgcccaggcccagtccggaaccggc
aagacctccatgatctcgctctccgtctgccagatcgtcgacaccgccgtccgagaggtt
caggccttgatactctcaccaactagagaacttgctgcacaaacagaaagagttatgctg
gccattggtgattacatcaatatccaagtgcatgcttgtattggtggcaaaagtattggt
gaggatattagaaagcttgagcatggagtgcatgttgtgtcaggaacacctggcagagtc
tgtgatatgatcaagagaaggaccttgcgtacaagagccattaagctcctaattctggat
gaagccgatgagatgttgggcagaggctttaaggatcagatatatgatgtctacagatat
ctacccccagagctccaggtttgcttgatctccgcaactctgccacatgagatcttggaa
atgaccagcaagttcatgactgacccagtccggatccttgtaaagcgtgatgaattgacc
ctagagggcatcaaacaattctttgttgctgttgagaaagaagaatggaagtttgatact
ctttgtgatctttatgatacactgacaatcacccaagctgtcattttctgcaacacgaag
agaaaggttgattggcttacagaaagaatgcgcagcaataacttcacggtatcagctatg
catggtgacatgcctcaaaaggaaagggatgccattatgggtgaattcaggtctggtgca
acccgtgttctaattacgacagatgtgtgggctcgaggcctggatgttcagcaggtctct
cttgtcataaactatgatcttccaaataatcgtgaactttacatccatcgcattggtcgc
tctggacgttttggtcgcaagggtgtggccatcaattttgtcaaaaaggaagacatccgt
atcctgagagatattgagcagtactacagcacacagattgatgaaatgccaatgaatgtt
gctgatctaatttga

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